Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0606 ATGACCTTGAAGAAAAGGGTCCTTTCAATTAACATTGAAGAGGCTGCTGTGGACTTTTTCAATCATCTCTTGCAAGAGAAGCCCAGAATTCCAGTTTTCATTCCTCTGATTCTGATTGCTTGGGCTGTTGAGAGATGGCTCTTTTCTGCCTCCTCTTGGGTTCCTCTTGCTCTTGCTGTGTGGACTACTATACAGTATGGGAAATACCAACGCAAACTACTCGTGGAGGACTTGGATAAGAAATGGAAGAGGATCATACTGAATGTCTCGCCCATCACACCATTGGAGCATTGTGAGTGGTTGAATAAGCTGTTGACAGAAATCTGGTCCAACTATTTTAATGCCAAGTTTTCAATAAGGCTATCTGCTATTGTTGAGAAACGTATAAAGCTCCGGAAACCAAGACTTCTTGAAAGAGTTGAGCTACAGGAGTTTTCACTAGGATCATGCCCTCCTAGCTTGGCTCTGAGAGGGATGCGTTGGTCAACTATTGGTGATCAGCGATTTCTGCAACTGGGTTTTGATTGGGATACAAGTGAAATGAGCATTTTGTTGCTTGCTAAGCTTGCAAAGCCGTTGATTGGAACTGCTCGAATTGTGATTAACAGTCTTCATATCAAGGGTGATCTTCTTGCTACGCCAATTCTAGATGGGAAAGCACTTCTGTACTCATTTGTATCAACTCCTGAGGTGAGAATAGGAGTTGCCTTTGGAAGTGGTGGGAGCCAATCACTTCCTGCCACTGAATGGCCTGTTGTTTCTTCTTGGCTGGAAAAACTTTTTGCTGACACCTTGGTTAAAACCATGGTGGAACCTCGGCGACGTTGTTTCACTTTGCCTGCTGTTGATTTAAGGAAAAAAGCAGTTGGAGGCATTGTATATATTAGAGTGATTTCAGCGAATAAACTTTCTGGGAGTTGCTTTAAGACATCTAGGAGGCAACCAAATGGGGCAACCAATGGTTATTCAGAGGAGAATTTTGATGACAAGGATCTGGAGACATTTGTAGAAGTAGAAGTTGAGGAATTAACCAGGAGAACAGATGTCAGACTTGGTTCAACCCCCAGATGGGATGCACCGTTTAATATGGTTTTACATGATAATACAGGAACTCTTCGTTTCAATCTTTATCAGAGCCATCCCAACAATGTGAGGTGTGACTATCTAGCAAGTTGTGAAATCAAGTTGAGGCATGTTGAAGATGATTCAACAATAATGTGGGCCGTAGGACCTGATTCTGGAGTCATAGCAAAGCAGGCACAGTTCTGTGGAGAAGAAATTGAAATGGTTGTCCCATTTGAGGGCCCCAACTCTGCAGAGTTGAAGGTGAGCATTGTAGTCAAAGAGTGGCAATTTTCTGATGGTTCGCATAGCTTGAACAGTATCCGGAGTAGCAACTCTCAGCAGTCAATTAATGGATCACCAAATTTTCAGTTAAAAACTGGAAGGAAAATTAGTGTAACTGTTGTGGAAGGAAAGGATCTTGCCGCAAAAGACAAAAATGGAAAATTTGACCCTTATATCAAATTGCAGTATGGAAAGGTTGTCCAGAAATCAAGAACTGGTCATACTCCAAATCCTGTCTGGAATCAGACATTTGAATTCGATGAGATTGGTGGTGGGGAATACTTAAAAATAAAAGGCTTCTCTGAAGAAATTTTTGGAGATGAAAACATTGGTAGTGCTCATGTGAATTTGGAAGGACTGGTTGATGGGTCAGTGAGGGATGTATGGATTCCTCTTGAAAGAGTGCGTTCTGGAGAATTAAGACTTCAAATATCAGTTAGAGTGGATGACCAAGAAGGATCCAAGGGTTCGGGTTTTGGCTCAGGCAATGGTTGGATTGAACTTGTTCTGATAGAGGGAAGGGATCTTGTTGCAGCCGATCTCAGAGGGACAAGTGATCCATATGTGAGGGTACACTACGGAAGCTTTAAGAAAAGGACAAAGGTCATATACAAAACTCTTAATCCTCAGTGGAACCAGACCTTAGAGTTCCCTGATGATGGAAGTCCCCTAATGCTTTATGTCAAAGATCATAATGCATTATTGCCCACATCAAGTATAGGTGAATGTGTTGTAGAATATCAAAGGTTGCCTCCAAACCAGATGGCTGACAAATGGATACCTCTCCAAGGGGTGAAAAGGGGTGAAATTCATGTCCAAATCACTAGAAAAGTTCCAGAGTTGCAGATGAGGCAAAGTCTAGACTCTGAACCTTCCTTGAGTAAACTACACGAAATTCCTAACCAGATAAAACAGATGATGATCAAGTTCAGGTCCTTCATAGAGGATGGAAATCTTGAAGGACTCTCTACAACATTGAGTGAGCTAGAAACTCTAGAGGATACACAGGAAGGATATATAGCTCAGCTGGAGACTGAACAAATGCTTCTGCTCAGCAAAATAAAGGAACTTGGCAAAGAGATCATTAATTCTTCTCCTTCCCTCAGCAGAAGATCTTCTTCAGCTGGAAACTGA 2481 0.42 MTLKKRVLSINIEEAAVDFFNHLLQEKPRIPVFIPLILIAWAVERWLFSASSWVPLALAVWTTIQYGKYQRKLLVEDLDKKWKRIILNVSPITPLEHCEWLNKLLTEIWSNYFNAKFSIRLSAIVEKRIKLRKPRLLERVELQEFSLGSCPPSLALRGMRWSTIGDQRFLQLGFDWDTSEMSILLLAKLAKPLIGTARIVINSLHIKGDLLATPILDGKALLYSFVSTPEVRIGVAFGSGGSQSLPATEWPVVSSWLEKLFADTLVKTMVEPRRRCFTLPAVDLRKKAVGGIVYIRVISANKLSGSCFKTSRRQPNGATNGYSEENFDDKDLETFVEVEVEELTRRTDVRLGSTPRWDAPFNMVLHDNTGTLRFNLYQSHPNNVRCDYLASCEIKLRHVEDDSTIMWAVGPDSGVIAKQAQFCGEEIEMVVPFEGPNSAELKVSIVVKEWQFSDGSHSLNSIRSSNSQQSINGSPNFQLKTGRKISVTVVEGKDLAAKDKNGKFDPYIKLQYGKVVQKSRTGHTPNPVWNQTFEFDEIGGGEYLKIKGFSEEIFGDENIGSAHVNLEGLVDGSVRDVWIPLERVRSGELRLQISVRVDDQEGSKGSGFGSGNGWIELVLIEGRDLVAADLRGTSDPYVRVHYGSFKKRTKVIYKTLNPQWNQTLEFPDDGSPLMLYVKDHNALLPTSSIGECVVEYQRLPPNQMADKWIPLQGVKRGEIHVQITRKVPELQMRQSLDSEPSLSKLHEIPNQIKQMMIKFRSFIEDGNLEGLSTTLSELETLEDTQEGYIAQLETEQMLLLSKIKELGKEIINSSPSLSRRSSSAGN* 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0606 826 Coils Coil 789 809 - -
Vra1g0606 826 Gene3D C2 domain 290 425 IPR035892 -
Vra1g0606 826 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 611 724 IPR035892 -
Vra1g0606 826 SMART C2_3c 614 708 IPR000008 -
Vra1g0606 826 SMART C2_3c 292 408 IPR000008 -
Vra1g0606 826 SMART C2_3c 484 578 IPR000008 -
Vra1g0606 826 Pfam C2 domain 292 402 IPR000008 -
Vra1g0606 826 Pfam C2 domain 615 711 IPR000008 -
Vra1g0606 826 Pfam C2 domain 484 581 IPR000008 -
Vra1g0606 826 ProSiteProfiles C2 domain profile. 463 579 IPR000008 -
Vra1g0606 826 PANTHER PLANT SYNAPTOTAGMIN 2 819 - -
Vra1g0606 826 ProSiteProfiles C2 domain profile. 585 709 IPR000008 -
Vra1g0606 826 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 325 405 IPR035892 -
Vra1g0606 826 PANTHER OS01G0128800 PROTEIN 2 819 - -
Vra1g0606 826 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 483 594 IPR035892 -
Vra1g0606 826 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 94 280 IPR031468 GO:0008289
Vra1g0606 826 CDD C2 615 711 - -
Vra1g0606 826 Gene3D C2 domain 468 597 IPR035892 -
Vra1g0606 826 Gene3D C2 domain 602 726 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0606 Vra-Chr1 7040153 7047274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0606 452 746 Lipid Metabolism Gene Families AT3G61300 23.977 3.60e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0606 - - gmx:100789237 1487.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0606 1 7040153 7047274 Vra7g3145 7 51228626 51235275 ECH
Vra1g0606 1 7040153 7047274 Vra1g0606 1 7040153 7047274 ECH
Vra7g3145 7 51228626 51235275 Vra1g0606 1 7040153 7047274 PCT