Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3144 ATGCGTTTGAACGCTTTACCCTCTTCCTACGCTCTCTTCGCCTCTTCCAAATTCAAATTCACATTCCCAGTAGGAATTTGCATTCGCGTTCGTGCTCTCAACACCTTTTCCTCTCTCCCAACTACTTGCCACGAAGACCACGATGATTTGTTCGCCCCTATTCCCACTCTTCGCCACTCTGACAATACCACCAACGCCATCGAGAGAATCGCCCTACGTTTGCGCAACTTAGGGTTAGCCTCCGCCGACCACGCCGACGACGACGATTTCCTGCGTCGCGAATGGCTTCGTCCCGATGAGGTGCTTTTGCCGTGGGACAAGCGAGAGGGGGAAGAGTTCGAGGAGCACGAGGAACAGCAGAAGGAGAAACTAAAGAAGAAGAATGCTAATGCAGTGACACTGGCGGAGAAAACGCTGGAGGAGGAGGAGCTGCGGCGGTTGCGAACGCTGGGAATGAGTCTTAAGGAGAAGGTCACTATCCCCCAAGCTGGCCTGACGCGAGCCGTGCTCGACAAGATTCACCGGCAGTGGAGCAACTGCGAGCTGGTGAGACTCAAGTTTCACGAGCTTCTTGCTCAGAACATGAAGTTGGCTCATCAAATTGTCGAGTGTAGAACTAGAGGGTTAGTTATATGGAGGTCGGGGAGTTATATGTGGGTGTACCGAGGTAGAAATTACCAAGGGCCGATGAAACCGATTGAAAAGGAAGGAGATGATCGAATTCCCGTGCCATCAGACGGGGATGCGGCACTGTTGCTGGCAAAGAGTGAGGCAGTTTTCTGGAAGGAGGAGAACATGACTCCAGAAGAAGTGGAGTTTAACAGGATGCTTGATGGGTTTGGTCCTCGTTTTGTTGAATGGTGGGGCACCGGAATACTTCCAATTGATGCTGATTTACTTCCCCCCACAGTTCCTGGTTACAAGACGCCTCTTAGGCTTCTTCCTGCTGGAATGCATCCACGACTGACTAATGATGAACTCACGAATATGCGGAAACTTGCTAAATCTCTTCCTTGTCACTTTGCCTTGGGGAGAAATAGAAATCTTCAAGGTCTGGCATCTGCTATTCTCAGGCTGTGGGAGAAAAGTTTAGTTGCAAAGATTGGAGTGAAGCGTGGTATTGTGAATACAAACAATGAACTGATGGCTCAGGAGCTGAAGAAATTAACAGGAGGTACTTTACTCCTGCGGAACAAATATTACATTGTAATATATCGTGGGAAGGACTTTGTTCCAACCAGTGTGGCTGCTGTTATTGCTGAAAGACAGGAAATGACAAAACATGTGCAGGATGTTGAGGAGAAGGTGCGGTGCAAAGTTCATGACATAGCTCCTTCAAGGGAAGATGAACCAAAATCCCAAGCAGGATCATTGGCTGAGTTCTATGAGGCTCAGGCATGCTGGGGAAGGGATATATCTACTGAAGAACGTGAGAGGATGAGGCAAGAGGTTGCCAAAGCCAAGAATGCTAAGCTTGCCAAAAAAATTGAATGTAAACTAGCTGTTGCCCAAGCCAAAAGGCTTAGAGCAGAGAAGCTATTAGCGAAAATAGAAGTATCTTTGGTTCCAGCTGGTCCTGATTATGACAAGGAAACAATCACAGATGAAGAACGTGTTATGTTCCGTTCAGTTGGTTTAAGAATGAAGGCATACTTGCCTCTTGGTATACGTGGTGTTTTCGATGGTGTCATTGAGAATATGCATCTTCACTGGAGGCATCGAGAACTTGTTAAATTAATAACAAAACAAAAGACCCTTGCTTTTGTTGAAGACACAGCTAGGTTATTGGAATATGAGAGTGGTGGAATACTAGTAGCAATAGATGAAATTCCTAAAGGATTTTCTCTTATTTACTATCGTGGAAAGAATTATAGGCGACCTATGACTATAAGGCCTAGAAACCTTCTAACAAAGGCAAAGGCATTGCAGCGGTCAATAGCCATGCAACGGCATGAGGCTCTGAGTCAGCATGTAACTGAATTGGGGGAGAAAATAGAAAAAATGAAAAAAGAACTAAGTGAGGATGAATTCTGA 2034 0.4621 MRLNALPSSYALFASSKFKFTFPVGICIRVRALNTFSSLPTTCHEDHDDLFAPIPTLRHSDNTTNAIERIALRLRNLGLASADHADDDDFLRREWLRPDEVLLPWDKREGEEFEEHEEQQKEKLKKKNANAVTLAEKTLEEEELRRLRTLGMSLKEKVTIPQAGLTRAVLDKIHRQWSNCELVRLKFHELLAQNMKLAHQIVECRTRGLVIWRSGSYMWVYRGRNYQGPMKPIEKEGDDRIPVPSDGDAALLLAKSEAVFWKEENMTPEEVEFNRMLDGFGPRFVEWWGTGILPIDADLLPPTVPGYKTPLRLLPAGMHPRLTNDELTNMRKLAKSLPCHFALGRNRNLQGLASAILRLWEKSLVAKIGVKRGIVNTNNELMAQELKKLTGGTLLLRNKYYIVIYRGKDFVPTSVAAVIAERQEMTKHVQDVEEKVRCKVHDIAPSREDEPKSQAGSLAEFYEAQACWGRDISTEERERMRQEVAKAKNAKLAKKIECKLAVAQAKRLRAEKLLAKIEVSLVPAGPDYDKETITDEERVMFRSVGLRMKAYLPLGIRGVFDGVIENMHLHWRHRELVKLITKQKTLAFVEDTARLLEYESGGILVAIDEIPKGFSLIYYRGKNYRRPMTIRPRNLLTKAKALQRSIAMQRHEALSQHVTELGEKIEKMKKELSEDEF* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3144 677 ProSiteProfiles CRM domain profile. 137 233 IPR001890 GO:0003723
Vra7g3144 677 ProSiteProfiles CRM domain profile. 531 631 IPR001890 GO:0003723
Vra7g3144 677 Coils Coil 415 435 - -
Vra7g3144 677 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 7 673 IPR045278 GO:0000375|GO:0003729
Vra7g3144 677 SUPERFAMILY YhbY-like 532 630 IPR035920 -
Vra7g3144 677 SMART CRS1_YhbY_2 139 222 IPR001890 GO:0003723
Vra7g3144 677 SMART CRS1_YhbY_2 322 406 IPR001890 GO:0003723
Vra7g3144 677 SMART CRS1_YhbY_2 533 620 IPR001890 GO:0003723
Vra7g3144 677 Gene3D - 138 238 IPR035920 -
Vra7g3144 677 Gene3D - 532 631 IPR035920 -
Vra7g3144 677 Gene3D - 321 416 IPR035920 -
Vra7g3144 677 Pfam CRS1 / YhbY (CRM) domain 139 222 IPR001890 GO:0003723
Vra7g3144 677 Pfam CRS1 / YhbY (CRM) domain 534 620 IPR001890 GO:0003723
Vra7g3144 677 Pfam CRS1 / YhbY (CRM) domain 322 406 IPR001890 GO:0003723
Vra7g3144 677 Coils Coil 651 671 - -
Vra7g3144 677 PANTHER (CRM) DOMAIN PROTEIN, PUTATIVE-RELATED 7 673 - -
Vra7g3144 677 Coils Coil 470 497 - -
Vra7g3144 677 SUPERFAMILY YhbY-like 138 231 IPR035920 -
Vra7g3144 677 ProSiteProfiles CRM domain profile. 320 417 IPR001890 GO:0003723
Vra7g3144 677 SUPERFAMILY YhbY-like 322 413 IPR035920 -
Vra7g3144 677 Coils Coil 121 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3144 Vra-Chr7 51221175 51226372 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3144 - - vra:106765477 1294.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3144 7 51221175 51226372 Vra7g3144 7 51221175 51226372 ECH
Vra7g3144 7 51221175 51226372 Vra1g0605 1 7033404 7039474 PCT