Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0605 ATGGCGTTCTCAAGCACTTGCAAACTTTCAGAATTTTCTTTCTCAGCATTCAATTCTCCTTCTCCTTGTCGCTCTTTCCACAAATTCCCATTTCGCACACTCACCTTCGCTTCTCTCCCAACCCCTAAATCTAACGTGTCTGCACCCTGGCTAACCAAATCACCTTCTCCCAAAAAGGTCACCGAACCCCTCACTGCCGACGACCCAATTCACAGGACAACCCCAAAACAACCGCAGAACGCCGTCGAGAGGATCGTCCTTCGGTTGCGCAACTTGGGTCTGCCTTCAGAAGAAGAAGAGCAACAAGAACAACAGGAGGAACTTCCGGCAAGTAGTCCGGCGCCGGTGACCGGAGATGAGAGGTTGAGCGAGTTGCTCCGGCGGGAGTGGGTTCGGCCGGATGTCGGACTGGTGGGCGAGGATGGGGAGGAGGAGATGATGCTGCCGTGGGAGAGGGAGGAGGAGAAGGTGGTGGTGGTTGGGAGTGGAAGGGATGAAGAAGGGTTGAAGAAGAGGAGGGTTACGGCTCCTAGTTTGGCTGATTTGACCCTTGAGGATGAGTTGCTGAGGAGGTTGAGGAGAGAGGGGATGCGTGTGAGGGAGAGGGTGAGTGTTCCCAAGGCTGGACTCACTCAGGAGGTGATGGAGAAGATTCATAAGAGGTGGATGAAGGAAGAATTGGTGAGGCTCAAGTTTCACGAGGAACTTGCGAAGGATATGAGGAAGGCTCATGAGATTGTTGAGCGTCGAACTGGAGGATTGGTTACATGGAGGGCAGGAAGTGTTATGATGGTGTATCGTGGTATTGATTACCAAGGGCCCGACTCGAGGAAGGAAGTTAGTGACAAGAAAGGTAATGACTTTTTTGTGCCTGATGTCTCATCCGGAAGTTTGTTGAAAAGTGAAGTCAGTAATGCAGTGTCATCTCTAGAAAAGAGTGAGGTGATGGAGAGGGAGCAAGAACAGTCTAAGAATGTGACAGAGGCGGAAGCAGAGTACAATGCACTTCTTGATGAATTAGGTCCCCGTTTTGTTGGATGGTGGGGTACGGGGATACTTCCTGTTGATGCTGATTTACTTCCAAGAACCATTCCAGGTTACAAAACACCTTTTAGGCTTCTTCCTACAGGAATGCGTTCTCGGCTAACAAATGCAGAGATGACCAATTTAAGGAAACTTGCAAAATCACTTCCTTGCCATTTTGCCTTAGGGAGAAATAGAAATCACCAAGGTCTAGCATGTGCTATTCTTAAGCTTTGGGAGAAAAGTTTAGTTGTAAAGATTGCTGTCAAACCTGGCATCCAGAACACAAACAATGAACTGATGTCTGAGGAGCTGAAGATGTTAACAGGAGGTACCTTGCTGCTAAGGAATAAATATTTCATTGTTATATATCGTGGGAAAGACTTCGTTCCAACAAGTGTGGCTACTGTTTTAGCTGAAAGAGAGGAAATGACAAAGCAAGTACAGGATGTTGAAGACAAGTTCCGGTGCAGAGCAGTTGATGCAATTCCATCAGGGCAAGGTGAAGCAACAGCACAGGCTGGGACTCTAGCAGAGTTCTACGAGGCCCAGGCTCGATGGGGAAGGGAAATATCTCCTGGAGAACGGGAGAAGATGGTGGAAGAAGCTGCCAAAGCCAAGACTGCTAAGCTTGTCAGAAAAATTGAACATAAACTATTTTTAGCCCAGACCAAAAAGCATAGAGCAGAAAGGCTCTTAGCTAAAATAGAAGCGTCAATGGTTCCAGCCGGTCCTGATTATGACCAGGAAACAATCACAGATGAAGAACGTGTTATGTTCCGTAAAGTTGGTTTAAGAATGAAACCATACTTACCACTTGGTATACGTGGTGTTTTTGATGGTGTTGTCGAGAATATGCATTTGCATTGGAAACACCGAGAACTTGTAAAATTGATGACAAAACAAAAGACTCTTGCTTTTGTGGAAGACACAGCAAGGTTACTTGAATATGAGAGTGGTGGAATACTGGTTGCAATAGAAAAAGTTTCCAAAGAATTTGCTCTTATTTACTATCGTGGAAAGAATTACAAGCGGCCATTTAATCTGAGGCCAAGAAACCTACTAACTAAGGGAAAGGCACTAAAGCGACATGTAGCTATGCAACGACACGAGGCTCTGAGTCAACATATTACTGAACTGGAAAAAACTATAGAAGAACTGAATAAAGAACTTGATAAGCCTCAAGATTTGGAAGATGATGATGGGGCCAGCACAGAGGAAGAGGATCTTAACCAAATAGACAACATCTCAGAATTGACCCTAAGTGAGAATGAAGATTCTGATGGTTTTGATGATGAGGAAGAAAGTGACTGGTTAGATGATGGGGAAGAAAGTGATTGGGAAGATGATGAAGACCCGAGTTTTCCAAATTCATAA 2400 0.4554 MAFSSTCKLSEFSFSAFNSPSPCRSFHKFPFRTLTFASLPTPKSNVSAPWLTKSPSPKKVTEPLTADDPIHRTTPKQPQNAVERIVLRLRNLGLPSEEEEQQEQQEELPASSPAPVTGDERLSELLRREWVRPDVGLVGEDGEEEMMLPWEREEEKVVVVGSGRDEEGLKKRRVTAPSLADLTLEDELLRRLRREGMRVRERVSVPKAGLTQEVMEKIHKRWMKEELVRLKFHEELAKDMRKAHEIVERRTGGLVTWRAGSVMMVYRGIDYQGPDSRKEVSDKKGNDFFVPDVSSGSLLKSEVSNAVSSLEKSEVMEREQEQSKNVTEAEAEYNALLDELGPRFVGWWGTGILPVDADLLPRTIPGYKTPFRLLPTGMRSRLTNAEMTNLRKLAKSLPCHFALGRNRNHQGLACAILKLWEKSLVVKIAVKPGIQNTNNELMSEELKMLTGGTLLLRNKYFIVIYRGKDFVPTSVATVLAEREEMTKQVQDVEDKFRCRAVDAIPSGQGEATAQAGTLAEFYEAQARWGREISPGEREKMVEEAAKAKTAKLVRKIEHKLFLAQTKKHRAERLLAKIEASMVPAGPDYDQETITDEERVMFRKVGLRMKPYLPLGIRGVFDGVVENMHLHWKHRELVKLMTKQKTLAFVEDTARLLEYESGGILVAIEKVSKEFALIYYRGKNYKRPFNLRPRNLLTKGKALKRHVAMQRHEALSQHITELEKTIEELNKELDKPQDLEDDDGASTEEEDLNQIDNISELTLSENEDSDGFDDEEESDWLDDGEESDWEDDEDPSFPNS* 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0605 799 MobiDBLite consensus disorder prediction 765 799 - -
Vra1g0605 799 Coils Coil 230 250 - -
Vra1g0605 799 Pfam CRS1 / YhbY (CRM) domain 594 669 IPR001890 GO:0003723
Vra1g0605 799 Pfam CRS1 / YhbY (CRM) domain 382 466 IPR001890 GO:0003723
Vra1g0605 799 Pfam CRS1 / YhbY (CRM) domain 185 267 IPR001890 GO:0003723
Vra1g0605 799 ProSiteProfiles CRM domain profile. 182 278 IPR001890 GO:0003723
Vra1g0605 799 MobiDBLite consensus disorder prediction 96 117 - -
Vra1g0605 799 MobiDBLite consensus disorder prediction 45 82 - -
Vra1g0605 799 Coils Coil 711 738 - -
Vra1g0605 799 SUPERFAMILY YhbY-like 382 473 IPR035920 -
Vra1g0605 799 ProSiteProfiles CRM domain profile. 591 691 IPR001890 GO:0003723
Vra1g0605 799 MobiDBLite consensus disorder prediction 730 799 - -
Vra1g0605 799 MobiDBLite consensus disorder prediction 740 754 - -
Vra1g0605 799 Gene3D - 182 282 IPR035920 -
Vra1g0605 799 Gene3D - 592 691 IPR035920 -
Vra1g0605 799 Gene3D - 381 474 IPR035920 -
Vra1g0605 799 Coils Coil 312 339 - -
Vra1g0605 799 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 41 787 - -
Vra1g0605 799 SUPERFAMILY YhbY-like 183 273 IPR035920 -
Vra1g0605 799 ProSiteProfiles CRM domain profile. 380 477 IPR001890 GO:0003723
Vra1g0605 799 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 41 787 IPR045278 GO:0000375|GO:0003729
Vra1g0605 799 SUPERFAMILY YhbY-like 592 690 IPR035920 -
Vra1g0605 799 Coils Coil 475 495 - -
Vra1g0605 799 SMART CRS1_YhbY_2 382 466 IPR001890 GO:0003723
Vra1g0605 799 SMART CRS1_YhbY_2 184 267 IPR001890 GO:0003723
Vra1g0605 799 SMART CRS1_YhbY_2 593 680 IPR001890 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0605 Vra-Chr1 7033404 7039474 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0605 - - gmx:100788177 1222.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0605 1 7033404 7039474 Vra1g0605 1 7033404 7039474 ECH
Vra7g3144 7 51221175 51226372 Vra1g0605 1 7033404 7039474 PCT