Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2859 ATGGAGGAACCCGGTAAACTGAAGCGTGCCCTGATTGATTCCTCGGCCGGAGCAATTTCCGGAGGAATATCCCGGACTGTTACCTCGCCCCTCGATGTTATTAAGATTCGATTCCAGGTTCAACTGGAGCCCACATCTTCGTGGGCTTTACTACGTAAGGATTTGGCTGCAGCTGCGTCTGCACCATCAAAATACACTGGCATGTTTCAAGCAACCAAGGATATTCTTAAAGAAGAAGGCGTTCAGGGATTTTGGCGGGGAAATGTCCCGGCATTGCTCATGGTTATGCCGTATACAGCTATACAATTTACAGTTTTACATAAGTTGAAGACTTTTGTCTCTGGCTCTTCGAAGACAGAGAATCACATTAATTTGAGCCCTTATCTTTCCTATGTCAGTGGAGCATTAGCTGGGTGTGCAGCTACAGTAGGTTCATACCCATTTGATCTTCTCCGTACCATATTAGCATCTCAGGGTGAACCAAAGGTATATCCAACCATGAGATCAGCATTCATTGATATTGTTCGTACACGTGGATTCCAAGGCTTGTATTCCGGACTGTCCCCTACTCTAGTGGAGATTATACCTTATGCAGGCCTACAATTTGGCACGTATGATACATTTAAGCGTTGGGCCATGGCTTTGAATCATAGATTTTCGAACGCTGCTGCAGAAGACAACATATCTAGCTTTCAGCTTTTCCTTTGTGGGTTAGCAGCTGGAACATGTGCCAAACTTGTCTGTCATCCACTTGATGTCGTCAAGAAAAGATTTCAGATTGAAGGGCTTCAAAGACATCCAAGATATGGAGCTCGAGTTGAGCATCGTGCATACAGGAACATGTTGGATGCCATGCAACGGATAATGCGATTAGAGGGTTGGGCTGGTTTGTACAAGGGGATAATCCCATCAACTGTTAAAGCTGCACCTGCTGGTGCTGTTACATTTGTTGCTTATGAGTTGACATCAGATTGGCTAGAGTCCACTTTTAGTTGA 996 0.4488 MEEPGKLKRALIDSSAGAISGGISRTVTSPLDVIKIRFQVQLEPTSSWALLRKDLAAAASAPSKYTGMFQATKDILKEEGVQGFWRGNVPALLMVMPYTAIQFTVLHKLKTFVSGSSKTENHINLSPYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRSAFIDIVRTRGFQGLYSGLSPTLVEIIPYAGLQFGTYDTFKRWAMALNHRFSNAAAEDNISSFQLFLCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPRYGARVEHRAYRNMLDAMQRIMRLEGWAGLYKGIIPSTVKAAPAGAVTFVAYELTSDWLESTFS* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2859 331 Pfam Mitochondrial carrier protein 126 213 IPR018108 -
Vra7g2859 331 Pfam Mitochondrial carrier protein 14 114 IPR018108 -
Vra7g2859 331 Pfam Mitochondrial carrier protein 228 327 IPR018108 -
Vra7g2859 331 PANTHER SOLUTE CARRIER FAMILY 25 3 330 - -
Vra7g2859 331 PRINTS Mitochondrial carrier protein signature 13 26 IPR002067 GO:0055085
Vra7g2859 331 PRINTS Mitochondrial carrier protein signature 26 40 IPR002067 GO:0055085
Vra7g2859 331 PRINTS Mitochondrial carrier protein signature 87 107 IPR002067 GO:0055085
Vra7g2859 331 PRINTS Mitochondrial carrier protein signature 140 158 IPR002067 GO:0055085
Vra7g2859 331 PRINTS Mitochondrial carrier protein signature 184 202 IPR002067 GO:0055085
Vra7g2859 331 PRINTS Mitochondrial carrier protein signature 237 259 IPR002067 GO:0055085
Vra7g2859 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 125 211 IPR018108 -
Vra7g2859 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 8 112 IPR018108 -
Vra7g2859 331 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 3 330 - -
Vra7g2859 331 Gene3D Mitochondrial carrier domain 6 329 IPR023395 -
Vra7g2859 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 228 325 IPR018108 -
Vra7g2859 331 SUPERFAMILY Mitochondrial carrier 8 320 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2859 Vra-Chr7 48724274 48728525 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2859 1 331 Organic Solute Cotransporters AT3G21390 72.619 0.0 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2859 K15108 - gmx:100784986 625.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2859 7 48724274 48728525 Vra7g2859 7 48724274 48728525 ECH
Vra7g2859 7 48724274 48728525 Vra5g0146 5 1178443 1182919 PCT