Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0146 ATGGAGGAGGAACCGAGCCAGCTGAAACGGGCTGCGATTGATGCCACCGCCGGAGCTCTTTCCGGGGCTGTATCCAGGACCGTCACGTCGCCTCTTGATGTTATTAAGATTAGGTTTCAGGTTCAACTAGAACCCACATCTTCATGGGCTTTACTACGTAAGGATTTGTCTACTCCTTCAAAATATACCAGCATGGTCCAAGCAAGCAAGGATATTTTCAGAGAAGAAGGCATACGGGGTTTTTGGCGGGGAAATGTGCCAGCTTTGCTCATGGTTATGCCATATACAAGTATACAATTTACTGTTCTACACAAGTTGAAGACTTTTGCCTCTGGTTCTTCCAAAACAGAGAATCACATGAATCTGAGCCCTTATCTATCCTATATGAGTGGGGCAATAGCTGGGAGTGCTGCTACTGTAGGTTCATATCCCTTTGATCTTCTCCGAACCATATTAGCTTCCCAGGGTGAACCCAAGGTTTATCCAAACATGAGAACAGCATTTGTTGATATTGTCCAGACTCGTGGCTTCCAAGGCTTGTATGCTGGATTGTCACCAACCCTAGTTGAGATTATACCATATGCAGCTCTACAATTTGGCACCTATGATACATTTAAACGTTGGACCATGGCGTGGAATCAACGTCAGTATTCGAATCCTACTGCAGAAAACATCTCTAGCTTTCAGCTTTTCCTCTGTGGAGTGAGTGCAGGAGCATGTGCCAAGCTCGCCACTCATCCACTTGATGTGGTCAAGAAAAGATTTCAGATTGAAGGTCTACAAAGGCATCCAAGATATGGAGCTCGGGTTGAACACCGTGCATACAACAATATGCTTGATGCCATAAAGCGAATATTACAAAGGGAGGGTTGGGCTGGTCTATATAAGGGGATAGTCCCATCAACTGTTAAAGCTGCACCAGCTAATGCTGTAACATTTGTGGCGTATGAATTGACATCAGACTGGCTGGAATCTCTTTTGACTTGA 987 0.4498 MEEEPSQLKRAAIDATAGALSGAVSRTVTSPLDVIKIRFQVQLEPTSSWALLRKDLSTPSKYTSMVQASKDIFREEGIRGFWRGNVPALLMVMPYTSIQFTVLHKLKTFASGSSKTENHMNLSPYLSYMSGAIAGSAATVGSYPFDLLRTILASQGEPKVYPNMRTAFVDIVQTRGFQGLYAGLSPTLVEIIPYAALQFGTYDTFKRWTMAWNQRQYSNPTAENISSFQLFLCGVSAGACAKLATHPLDVVKKRFQIEGLQRHPRYGARVEHRAYNNMLDAIKRILQREGWAGLYKGIVPSTVKAAPANAVTFVAYELTSDWLESLLT* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0146 328 SUPERFAMILY Mitochondrial carrier 9 317 IPR023395 -
Vra5g0146 328 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 4 327 - -
Vra5g0146 328 Gene3D Mitochondrial carrier domain 6 325 IPR023395 -
Vra5g0146 328 ProSiteProfiles Solute carrier (Solcar) repeat profile. 225 322 IPR018108 -
Vra5g0146 328 PANTHER SOLUTE CARRIER FAMILY 25 4 327 - -
Vra5g0146 328 Pfam Mitochondrial carrier protein 123 209 IPR018108 -
Vra5g0146 328 Pfam Mitochondrial carrier protein 225 323 IPR018108 -
Vra5g0146 328 Pfam Mitochondrial carrier protein 14 110 IPR018108 -
Vra5g0146 328 ProSiteProfiles Solute carrier (Solcar) repeat profile. 9 109 IPR018108 -
Vra5g0146 328 ProSiteProfiles Solute carrier (Solcar) repeat profile. 122 208 IPR018108 -
Vra5g0146 328 PRINTS Mitochondrial carrier protein signature 14 27 IPR002067 GO:0055085
Vra5g0146 328 PRINTS Mitochondrial carrier protein signature 27 41 IPR002067 GO:0055085
Vra5g0146 328 PRINTS Mitochondrial carrier protein signature 84 104 IPR002067 GO:0055085
Vra5g0146 328 PRINTS Mitochondrial carrier protein signature 137 155 IPR002067 GO:0055085
Vra5g0146 328 PRINTS Mitochondrial carrier protein signature 181 199 IPR002067 GO:0055085
Vra5g0146 328 PRINTS Mitochondrial carrier protein signature 234 256 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0146 Vra-Chr5 1178443 1182919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0146 3 328 Organic Solute Cotransporters AT3G21390 72.205 0.0 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0146 K15108 - gmx:100803750 601.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0146 5 1178443 1182919 Vra5g0146 5 1178443 1182919 ECH
Vra7g2859 7 48724274 48728525 Vra5g0146 5 1178443 1182919 PCT