Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2840 ATGGCCGTCGTAACTAGCAACGGCAAGCGCCGCCAGCATTGGCTCTCCGTGGGTCACCACCTTCCATCTCCCAATTCCAAAAGGCTCAGACTGTCGGCAACATCCGACAACCACGCGCACTCTGTGTTATCCTCGAGTAGTATCGTTTCCAGAATTTCCAAATATCCTGAAGCCAAGCCACTGGTGCGTAGGGAGGTTCACGCACCGTGTAGACCCCGTAAGTTTGACTTTCCTACCTTTAATAGAATGAAATCGAGTTTGAATGCCAGTGGTAGTTATTATGATCGCAAGGACGAGATTGTTAATGATGTGGGCAACACGCTGAATGAAAATTACGAAAGGGCGAAGAATTCAGCGTTAGCTAGCATTAGGTTTGGGGAAAAGGGTAAGGAGGTGATAGAAGTGGATGATGGTAGTCCCAAGGGCATGGTTTCCGAAGATTCAGGTGTGGAGGAAGTTCATTTTAGGGAAGATGGACGGGATGTGCGCTCTGTGGTGACGGAGCACAAGTGGCAAGAGGGTGATTTGGTTGTGACTGAAGTGAAGGATATGAAAGCTAAGGATGTGCGTGGCGGTCCTCAGCAGCAGTCAACTTCATCTGTGGTTTCGGAATTGACTAACGGCGATTTGAATGTTGTTAATGCTGTGAAGATGTTCGGCACTCTGTCTTTAACTCCCGAACGTGATGTTTCGGATGTTCATGCCTACAGGAAGTTGCTTGAGGCTGTTGACAAGCGCTCGGATACGCTTAAGAGGCTGTCGGCTGAAATTAAGCTTAATGAGAAGCGTAGGTCCACATTTGAATTGTTGCGCCCGAAGAAGGAACTAGTACAGGAAGTGCCCTTTGAACCTTTTATTCCTCTTACTGAAGAGGAAGAAGTTGAGGTCACACGTGCCTTTTCTGCCAACAGGAGGAAGATCTTGGTTGCCCATGAGAAATCTTGCATTGAGGTCTCAGGAGAAAAATTTCAATGCCTTAGACCGGGTGCATGGTTAAATGACGAGTTAATAAGTGGCAAGAATGGTTATGATTTCAAATCTGTGAGGAGATGGACCAGCCAAAAGAAACTGGGATATGGTCTACATGAATGTGATAAAATTTTTGTTCCTATCCATAAAGAGATCCATTGGTGTTTGGCCGTTATCAATAAGAAAGAGAAGAAATTTCAGTACTTGGATTCACTGAAAGGAGTAGATACCCATGTGATGAAAGTTCTGGCTAGCTATATTGTAGATGAAGTAAAGGACAAGACTGGAAAAGATATGGATATAAGTTCTTGGGAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGAATGGGTATGATTGTGGGGTTTTTATGATCAAATACGCTGACTTCTATAGCAGAAACTCGGGGCTGTGTTTCAACCAGGAACACATGTCGTACTTCCGGCGCAGAACAGCTAAAGAAATCTTGAGATTAAGAGCTGACTGA 1458 0.4492 MAVVTSNGKRRQHWLSVGHHLPSPNSKRLRLSATSDNHAHSVLSSSSIVSRISKYPEAKPLVRREVHAPCRPRKFDFPTFNRMKSSLNASGSYYDRKDEIVNDVGNTLNENYERAKNSALASIRFGEKGKEVIEVDDGSPKGMVSEDSGVEEVHFREDGRDVRSVVTEHKWQEGDLVVTEVKDMKAKDVRGGPQQQSTSSVVSELTNGDLNVVNAVKMFGTLSLTPERDVSDVHAYRKLLEAVDKRSDTLKRLSAEIKLNEKRRSTFELLRPKKELVQEVPFEPFIPLTEEEEVEVTRAFSANRRKILVAHEKSCIEVSGEKFQCLRPGAWLNDELISGKNGYDFKSVRRWTSQKKLGYGLHECDKIFVPIHKEIHWCLAVINKKEKKFQYLDSLKGVDTHVMKVLASYIVDEVKDKTGKDMDISSWEKEFVEDLPEQQNGYDCGVFMIKYADFYSRNSGLCFNQEHMSYFRRRTAKEILRLRAD* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2840 485 Gene3D Adenoviral Proteinase; Chain A 277 482 - -
Vra7g2840 485 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 1A 336 483 - -
Vra7g2840 485 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 1A 1 337 - -
Vra7g2840 485 ProSiteProfiles Ubiquitin-like protease family profile. 260 455 IPR003653 GO:0006508|GO:0008234
Vra7g2840 485 Pfam Ulp1 protease family, C-terminal catalytic domain 342 479 IPR003653 GO:0006508|GO:0008234
Vra7g2840 485 MobiDBLite consensus disorder prediction 1 27 - -
Vra7g2840 485 SUPERFAMILY Cysteine proteinases 284 483 IPR038765 -
Vra7g2840 485 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 1 337 - -
Vra7g2840 485 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 336 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2840 Vra-Chr7 48551600 48558321 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2840 K08592 - gmx:100797013 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2840 7 48551600 48558321 Vra7g2840 7 48551600 48558321 ECH
Vra7g2840 7 48551600 48558321 Vra5g0131 5 1093828 1100517 PCT