Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0131 ATGGGTGCGATGACCCCCAACCGCAAGCGCACCGAAGAATGCATGAACGTAAACCTCACTAATTCAGATTCCTCCCGTAAACGCTCCAAATTATCTACCAAACCCGTTCCGTCCGCCGCCAGCGCCATCGCGCGACTCTCCAGGTATCCGCAGGTTAACGCGCCGTTCGCGAGGGAGGTTCACGCACCGTGTCGGCGGACAAAATTTTTACTCTCTGCTAGGGTTAGCAGTCGCGCTGGCGATGCCATGGGGAACGTTCTGATCGCCAAGTTCGAGAAGGCGAAGCGTTCGGCGTTGGAGAAGTGTAGGTCAGTGGTGGAGAAGGGAAAGGAGGTGATTGTAGTGGACGCGGAGAGTGATGAGCCTTGTGCGGATTCGAGTGTGGAAGAGCTGCATGATGACGGTGGCAAGTTTGGGGTTCAGCGGCAGTCGCAGTCGACGTTATCGTTTGATTCGGAGCTGAGGAATGCGGAATTGAAGGTAGCGAGTAGAGGGGAGTTGTGGGGTTCTGAGACGCAGCTTGATGTTGAAAGTGTTCTTGCGTATAAGAAGTTGCTTGAGGATGTTGGGAGGAGAAATGGCACATTCCAGAGGCTGAATTTTGAGATTGACCTGAACGAGAAGCGCAGGGACCATTTTAATTTGTTGAGGCCGAAGAAGGAATTGGAGGAATCAGAAGCGCTGAAAGAACCATTTGTTGCTCTTAGTAGTGAGGAAGAAGATGAGGTTGAGCGTGCCTTCTCTGCCAACCGTTGGAAAATCTTGGTTACCCATGAGAATTCTAATATTGAGATTACGGGAGAAAAGTTTCAATGCCTTAGGTCAACTGGATGGTTAAATGATGAGGTGATAAATTTGTATTTAGCTTTGCTGAAGGAGAGGGAACAAAGACAGTCACATAAATTTCTGAAATGTCATTTTTTCAATACCTTTTTCTACAAAAAGTTAATAAGTGGCCCAAATGGTTATGATTTCAAATCTGTCAGAAGATGGACAAGCCAACGGAAATTGGGATATAGTTTACTTGAATGTGATAAAATATTTGTACCTATCCATCAAGAGATACATTGGTGCTTGGCAGTCATCAATAATAAAGATAAGAAATTGCAGTATCTTGACTCAATGAAAGGAGAGGATAGATCTGTGCTAGAAAAGCTGGCTAAATATTTTGCGGATGAAGTAAATGACAAGAATGGACAAGATATTGGTGTTTATACCTGGGAAAAAGAATTTGTGAAAGACCTTCCTGTTCAGAAAAATGGGTGTGATTGTGGGGTGTTTATGATCAAATATGTGGACTTTTATAGCAGGGGCCTGGAGCTATATTTTGACCAGGGAAACATGCCTTACTTCCGGCGTAGGACAGCAAAGGAGATCTTGAGACTGAAAGCTGAATGA 1398 0.4528 MGAMTPNRKRTEECMNVNLTNSDSSRKRSKLSTKPVPSAASAIARLSRYPQVNAPFAREVHAPCRRTKFLLSARVSSRAGDAMGNVLIAKFEKAKRSALEKCRSVVEKGKEVIVVDAESDEPCADSSVEELHDDGGKFGVQRQSQSTLSFDSELRNAELKVASRGELWGSETQLDVESVLAYKKLLEDVGRRNGTFQRLNFEIDLNEKRRDHFNLLRPKKELEESEALKEPFVALSSEEEDEVERAFSANRWKILVTHENSNIEITGEKFQCLRSTGWLNDEVINLYLALLKEREQRQSHKFLKCHFFNTFFYKKLISGPNGYDFKSVRRWTSQRKLGYSLLECDKIFVPIHQEIHWCLAVINNKDKKLQYLDSMKGEDRSVLEKLAKYFADEVNDKNGQDIGVYTWEKEFVKDLPVQKNGCDCGVFMIKYVDFYSRGLELYFDQGNMPYFRRRTAKEILRLKAE* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0131 465 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 1A 180 464 - -
Vra5g0131 465 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 1A 1 177 - -
Vra5g0131 465 Pfam Ulp1 protease family, C-terminal catalytic domain 278 459 IPR003653 GO:0006508|GO:0008234
Vra5g0131 465 MobiDBLite consensus disorder prediction 11 36 - -
Vra5g0131 465 MobiDBLite consensus disorder prediction 1 37 - -
Vra5g0131 465 SUPERFAMILY Cysteine proteinases 231 463 IPR038765 -
Vra5g0131 465 Gene3D Adenoviral Proteinase; Chain A 221 463 - -
Vra5g0131 465 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 1 177 - -
Vra5g0131 465 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 180 464 - -
Vra5g0131 465 ProSiteProfiles Ubiquitin-like protease family profile. 263 435 IPR003653 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0131 Vra-Chr5 1093828 1100517 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0131 K08592 - gmx:100802161 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2840 7 48551600 48558321 Vra5g0131 5 1093828 1100517 PCT