Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2829 ATGCATGCACAACACAAATCCCCCAAGACATACCCGACACTTGCCCAGGTATTAGAAGAAGTAAAGAGAATGACAGACATAGGGTTCCCAATATCAGCCATGAGCTTTGTGGGGTACCTTAAAAACTTGACCTTAGCTGTGTGCATGGGAAGGTTGGGAAGCCTGGAGTTAGCTGGAGGCTCTTTGGCCATAGGTTTCACCAACATAACTGGTTACTCTGTCCTCTCAGGTCTAGCCATGGGCATGGAACCCCTCTGCACCCAAGCCTTCGGTTCTAGAAACTTCTCCTTACTCTCTCTAACTCTGCACAGAACAATTCTCATGTTACTTCTATTTTCTCTTCCCATTTCTCTTCTTTGGCTCAACCTCCAACCTCTCATGCTTTTCCTTCGTCAGAATCCAGACATAACTCGTGTAGCAACCCTCTATTGCCGCTTCGCCATCCCAGACCTCATAGCCAACAGCTTCCTCCACCCTCTTCGCATCTATCTACGCAGCAAAGGAACAACTTGGCCACTGCTGTGGTGCACTTTACTTTCCATTCTTCTACACCTTCCCACCATCACCTTTCTAACCTTCAAACTCCACCTTGGCGTTCCGGGAATCGCTGTTTCATCCTTCGTTGCCAATTTCAACAACCTTTTCTTCCTTCTTCTGTACATGCTCTATACACGCGTTCCCGAGGAGTCCTTACACATGCCGTTACTACTGCCTCCTACCATGTCACATAATAATGTGATAACATGTGGTAGCAGTGGTAGTACTCTTGCCATGGAGTGGGGTGTGCTACTGAAATTTTCAATACAAAGTTGTCTGGCTGTTTGCTTGGAATGGTGGTGGTACGAATTGATGACAATCTCAGCAGGCTACCTCAACAACCCTCGTGTTGCTCTAGCCACGGCTGGCATAGTGATACAAACCACATCTCTTTTGTACACTTTGCCAACAGCACTGAGTGCATCGGTGTCAACGAGAGTAGGGAATGAGCTTGGGGCGGGGCAAGCTGAAAGAGCGAGTTTGGCAACGGTGGTAGCGATTGGATTAGCACTTGCAAGCTCAATTTTTGGTTTATTGTGGACCACTGTGGGAAGAGAAAAGTGGGGGAGAGTGTTCACCAGTGACGGTGAGGTGCTGCAACTGAGTATGGCAGTCTTACCTATAATCGGAGTTTGTGAGTTAGCGAATTGTCCACAAACCACAAGCTGTGGAATCCTGAGAGGAAGTGCTAGGCCTGGTGTTGGGGCAGTTATAAACTTTTGCTCCTTTTATTTGGTGGGAGCACCGGTAGCCATTGTTTTGGCCTTCGTTTGGAAACTTGGGATGGTTGGGCTGTGTTATGGATTGCTGGCAGCACAGATCGCATGTGTGGTGTCAATTTTCGTTGTGGTGTACAAAACTGACTGGGAAACGGAGTCATTGAAAGCCAGAAGCTTGGTGGGAAAGGGTGTGTCTGGCACTTTCGCATTTCATCAGAACCAAATTACGGTCAAATGTGAAGAACCTGTTGTCTTTCTCAAAGACAACAACTCAGAAAAGTGA 1539 0.4737 MHAQHKSPKTYPTLAQVLEEVKRMTDIGFPISAMSFVGYLKNLTLAVCMGRLGSLELAGGSLAIGFTNITGYSVLSGLAMGMEPLCTQAFGSRNFSLLSLTLHRTILMLLLFSLPISLLWLNLQPLMLFLRQNPDITRVATLYCRFAIPDLIANSFLHPLRIYLRSKGTTWPLLWCTLLSILLHLPTITFLTFKLHLGVPGIAVSSFVANFNNLFFLLLYMLYTRVPEESLHMPLLLPPTMSHNNVITCGSSGSTLAMEWGVLLKFSIQSCLAVCLEWWWYELMTISAGYLNNPRVALATAGIVIQTTSLLYTLPTALSASVSTRVGNELGAGQAERASLATVVAIGLALASSIFGLLWTTVGREKWGRVFTSDGEVLQLSMAVLPIIGVCELANCPQTTSCGILRGSARPGVGAVINFCSFYLVGAPVAIVLAFVWKLGMVGLCYGLLAAQIACVVSIFVVVYKTDWETESLKARSLVGKGVSGTFAFHQNQITVKCEEPVVFLKDNNSEK* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2829 512 TIGRFAM matE: MATE efflux family protein 46 444 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra7g2829 512 PANTHER PROTEIN DETOXIFICATION 55 12 484 - -
Vra7g2829 512 Pfam MatE 270 431 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra7g2829 512 Pfam MatE 30 187 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra7g2829 512 CDD MATE_eukaryotic 20 474 IPR045069 GO:0042910|GO:1990961
Vra7g2829 512 PANTHER MULTIDRUG RESISTANCE PROTEIN 12 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2829 Vra-Chr7 48458983 48464225 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2829 K03327 - gmx:100798616 814.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2829 7 48458983 48464225 Vra7g2829 7 48458983 48464225 ECH
Vra7g2829 7 48458983 48464225 Vra5g0116 5 964014 966356 PCT