Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0116 ATGTCTAAGATGGTTGCGGAGGAGAAACCCCAAAAGACATACCCGACAACTGCTGAGGTAGTGGATGAGTTGAAGAGAATGGGGGACATAGGAGTTCCAATAGCAGCAATGAGCCTTGTGGGATACATAAAAAACATGGTGTTGGTTGTGTGCATGGGAAGGTTGGGAAGCCTTGAGTTAGCTGGTGGTGCTTTGGCCATAGGCTTCACCAACATAACTGGTTTCTCTGTCCTCTCAGGTTTAGCCATGGGAATGGAACCTCTTTGCACGCAAGCCTTTGGTTCAAGAAACTTGTGTTTGGTCTCTCTAACTTTACAAAGGACAATTTTCATGTTACTGGCAGCTTCACTGCCCATTTGTTTCCTGTGGCTGAAGCTCGAGCCTCTGATGCTATGGCTTCAGCAGAACCCTGAGATAACCAAAGTCGCAAGCATCTATTGCCGGTTCTCCATCCCAGACCTCATTGCCAACAGCTTCCTTCACCCAATTCGAATCTATTTACGTAGCAAAGGGACAACATGGCCTCTACTGTGGTGCACTTTGCTGTCCATTCTCATACACATCCCTGTCGTGACTTTTTTTACCTTCAAACTCCACCTTGGTGTACCCGGGATTGCTATGTCAGCTTTTGTTGCCAACTTCAACACCCTTTTCTTCCTCCTATCATACATGCTCTACATGCGCGTCTCAAAGGGGTCACTTTCCATGCCTTTATTAATATCTCGTCCCTTGTCATCACGACAACAAGACCAAAATTTAACCAGTCTTATCAGTTCCACAACAACAGCAGCAACAATAACAACAACAACAACCTCGTTAGGCAAAGAGTGGGGCACACTTATAAGGTTTTCAATTCAGAGTTGCTTAGGAGTGTGCTTGGAATGGTGGTGGTACGAGTTCATGACAATTCTAGCAGGCTACCTTTACAATCCGCGTGTAGCCTTAGCCACCGCTGGCATAGTAATTCAAACCACATCTCTTATGTACACTTTACCAACAGCACTGAGTGCTTCAGTGTCAACAAGAGTGGGGAATGAACTCGGGGCGGGTCAACCCGAGAGGGCAAGGTTGTCAACAATTGTGGCAATAGGAATGGCTCTTGCAAGTTCAATATTGGGTTTGTTATGGACCACATTAGGGAGAGAGAGATGGGGGAGGGTTTTCACCAGTGATAGTGAGGTGTTGGAACTTACCATGAGTGTTTTACCCATAATTGGGATTTGTGAGTTAGCAAACTGTCCTCAAACCACAAGCTGTGGAATCCTTAGGGGAAGTGCTAGGCCTGGTGTTGGGGCAGGGATAAATTTCTATTCATTTTACTTGGTGGGGGCACCAGTGGCTATAGTGATGGCATTTTTTTGGAGACTAGGGTTGGTGGGTCTTTGCTATGGGCTGTTGGCAGCACAGATAGCATGTGTGGTCTCTATTCTAGTTGTGGTATACAACACAGATTGGGAAAGGGAGTCCTTGAAGGCAAAAAGCTTGGTGGGAAAGACTTCATGTGACACAACGGAACATGGAGACCAAACACTAGTCAAATGTGAAGAAGGTCTTGTCTTTCTCAATGAGAAGAACAGATCCCTAAAGTGA 1590 0.4591 MSKMVAEEKPQKTYPTTAEVVDELKRMGDIGVPIAAMSLVGYIKNMVLVVCMGRLGSLELAGGALAIGFTNITGFSVLSGLAMGMEPLCTQAFGSRNLCLVSLTLQRTIFMLLAASLPICFLWLKLEPLMLWLQQNPEITKVASIYCRFSIPDLIANSFLHPIRIYLRSKGTTWPLLWCTLLSILIHIPVVTFFTFKLHLGVPGIAMSAFVANFNTLFFLLSYMLYMRVSKGSLSMPLLISRPLSSRQQDQNLTSLISSTTTAATITTTTTSLGKEWGTLIRFSIQSCLGVCLEWWWYEFMTILAGYLYNPRVALATAGIVIQTTSLMYTLPTALSASVSTRVGNELGAGQPERARLSTIVAIGMALASSILGLLWTTLGRERWGRVFTSDSEVLELTMSVLPIIGICELANCPQTTSCGILRGSARPGVGAGINFYSFYLVGAPVAIVMAFFWRLGLVGLCYGLLAAQIACVVSILVVVYNTDWERESLKAKSLVGKTSCDTTEHGDQTLVKCEEGLVFLNEKNRSLK* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0116 529 PANTHER PROTEIN DETOXIFICATION 55 15 501 - -
Vra5g0116 529 PANTHER MULTIDRUG RESISTANCE PROTEIN 15 501 - -
Vra5g0116 529 CDD MATE_eukaryotic 23 491 IPR045069 GO:0042910|GO:1990961
Vra5g0116 529 Pfam MatE 33 190 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra5g0116 529 Pfam MatE 288 448 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0116 Vra-Chr5 964014 966356 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0116 K03327 - gmx:100785533 889.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0116 5 964014 966356 Vra5g0116 5 964014 966356 ECH
Vra7g2829 7 48458983 48464225 Vra5g0116 5 964014 966356 PCT