Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2820 ATGGCCATTGCAAAGAGCGCTGTTCTTATTCTGCTCTTTGCATTGGTCTGCAACGCGAACGGAGCACCAAACCAACCACGTATTGCTGGTCCTGACATGTTCAAGAATAAAAATGTGGCTAAGGATGTTCTACTTCCTGGCGAGCAAGTAATTAACGTCATGAATTTTGGAGCCAAAGCTGATGGCAGGACCGATTCCACCCAGGCGTTCATGGATGCATGGCAAAAGGTGTGCCATCAAACGACGGGACCAGTGAGGCTTTTGATTCCTGAAGGCAGATTCTTGATTTCATCTATGTATTTCAGTGGACCATGCACTTGTCAAACTCCAGTAACAATTCAAGTTAAAGGGTATGTGATGGCTACCACGGATATTTCAGAGTATGAAAACGGCGACTGGCTCATGTTCGAGAAGCTCAATGGGCTGAAAATTATTGGCGGGGGAACTTTCGATGGCCAGGGAAAAAAGTCGTGGGAGTACTCCGAGAATTGCGAATCAGGTGATGACCGTGCTTGCGCCAGGAATCCAAGCAGCCTTTTCTTCAGCGATTGCAGCAACGTGGTTGTACAGGGCATCAGGACTGCTAATCCCAAAGGCTTTCACATATTCGTTACCAAATGTACAAACATAAGATTGAGAAAACTGAAGCTGGTTGCCCCCGAAACCAGCCCCAACACTGATGGCATCCATGTCAGCCACTCTGACACCGTGATTATGTCCAGAAACACCATTGCAACTGGGGATGATTGCATCTCTATGATACAAGGAGTGAAAAATGTTTTCATCAACAGACTCAAGTGTGGCCCTGGCCACGGTATAAGTATCGGTAGCCTTGGGAAATATCAGAATGAGGAAGAGGTCAGAGGCATTCGCATTCAGAATTGCTCATTGATCAACACAACCAATGGCCTCAGAGTGAAAGCATGGCCAGATAGATATGCAGGTGCAGCATCAGACATAAGCTTCAGTAACATTAACATGCAAAATGTCAGGAACCCTATCATCATTGACCAAGAGTATGAATGTTATCCAGACTGCAAAAAGAAGCCGTCACTTGTAAGGATCCAAAATGTTCATTTCCAAAATGTGAAAGGAACAACAACTTCACCACTTGCAGTGGACTTAAGGTGCAGCAAGCTGTTTGGGTGCCAAGGTGTTACAGTTAAGGACATTGACCTGAAGTTTGGAGATGCCCCAACCACCTCAAGATGTGTCAATACTCGACCGCTCTTTGCTGGTGTGCTAATGCCCCCACCTTGCGCATAG 1266 0.4613 MAIAKSAVLILLFALVCNANGAPNQPRIAGPDMFKNKNVAKDVLLPGEQVINVMNFGAKADGRTDSTQAFMDAWQKVCHQTTGPVRLLIPEGRFLISSMYFSGPCTCQTPVTIQVKGYVMATTDISEYENGDWLMFEKLNGLKIIGGGTFDGQGKKSWEYSENCESGDDRACARNPSSLFFSDCSNVVVQGIRTANPKGFHIFVTKCTNIRLRKLKLVAPETSPNTDGIHVSHSDTVIMSRNTIATGDDCISMIQGVKNVFINRLKCGPGHGISIGSLGKYQNEEEVRGIRIQNCSLINTTNGLRVKAWPDRYAGAASDISFSNINMQNVRNPIIIDQEYECYPDCKKKPSLVRIQNVHFQNVKGTTTSPLAVDLRCSKLFGCQGVTVKDIDLKFGDAPTTSRCVNTRPLFAGVLMPPPCA* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2820 421 Pfam Glycosyl hydrolases family 28 81 407 IPR000743 GO:0004650|GO:0005975
Vra7g2820 421 PANTHER - 2 421 - -
Vra7g2820 421 SMART pbh1 287 308 IPR006626 -
Vra7g2820 421 SMART pbh1 184 204 IPR006626 -
Vra7g2820 421 SMART pbh1 317 338 IPR006626 -
Vra7g2820 421 SMART pbh1 207 233 IPR006626 -
Vra7g2820 421 SMART pbh1 350 390 IPR006626 -
Vra7g2820 421 SMART pbh1 234 255 IPR006626 -
Vra7g2820 421 ProSitePatterns Polygalacturonase active site. 264 277 IPR000743 GO:0004650|GO:0005975
Vra7g2820 421 Gene3D - 45 412 IPR012334 -
Vra7g2820 421 PANTHER POLYGALACTURONASE 2 421 - -
Vra7g2820 421 SUPERFAMILY Pectin lyase-like 47 420 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2820 Vra-Chr7 48391241 48393771 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2820 50 420 Glycoside Hydrolase AT4G18180 42.377 3.32e-110 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2820 K01213 - gmx:100800324 676.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2820 7 48391241 48393771 Vra7g2820 7 48391241 48393771 ECH
Vra7g2820 7 48391241 48393771 Vra5g0109 5 876759 878604 PCT