Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0109 ATGGGCATGAAAGAGAGAGTAGGTGTTCTTATTCTGTACGTTGCACTGGTTTATCATGTGGGTGCTGCCAAGAAAGTAATGCCAGTTGCTGGTCCTGATATCTACAAGAATAAAAACTTAGATCAGGATATACTTCTTCCAGGGGAAAAGATAAACAATGTCATAAGCTTTGGGGCCAAAGCTGATGGCAAGTTTGACTGCACTCAGGCTTTCATGGATGCATGGCGAGCAACTTGCCACTCCAAAGTTCAAGCCAGGCTTCTGGTTCCAGAGGGAACATTTGTGCTTTCTTCCATGTTTTTCGCAGGTCCATGTTCTACTCCAGAGCCCGTAACGATCCAAGTTGTAGGCACCATTGCTGCTACAACAGATCTCAGTGAATATGAGAATAACGAATGGCTTTTTTTTGAGGACATGGATGGTATAAAAATCATCGGTGGTGGTACTTTTGATGGTGTCGGTAAGGAATCATGGAAAACGGCTACCGACTGTAAAGCAGACCCCAGCGCAACCTGCATCAGAAACCCTTCTAGTATATATTTCCACAGAATTAAGAATGGAATTATACAGAACGTTACATCCACAAACCCCAAAGGCTTTCACATATTTGTGACTAATTGTGCTAACATCAGACTCCGACGACTAAACCTCAGTGCACCAGAAGAAAGCCCTAACACCGATGGAATTCATATTAGCCAGTCAATCGATGTTGAAGTAGCCAGAAATACCATTGAAACTGGAGATGATTGTATTGCCATGTTACACGGATCCCACCAAGTTTCCATCGACAATGTGAGTTGTGGTCCTGGACATGGTATAAGTATTGGTAGTCTTGGAAAGGTCGAGGAAGAGCTAGAAGTGAAAGACATTCAAGTGAAGAACGTGTCGATGGTTGGTACAGAAAATGGCGTGAGAATCAAGACATGGCCAGATCGATATGCTGTCAATGCATCAAACATCACCTTCAGTGACATCAGCATGCAAAATGTTAAAAACCCTATCGTCATTGACCAAGAATATCAGTGCTCTTCAAAATGCAAGGCTTCACTTGTAAAGATAAAAGATGTTGTTTTTTCTAATATAAAGGGAACCACTACTTCACCAATTGCAGTGGATTTAAGGTGTAGCAGCAAGTTCCCTTGTGAAAGTATTAAACTTGAGAACATAGGCCTGTCGCTTAATTCCAAGCCGACCGGATCTAGATGTGCAAACATTAAACCAATTTACAAGGGCTTGCAAAATCCACCAGGTTGTCTATAA 1260 0.4214 MGMKERVGVLILYVALVYHVGAAKKVMPVAGPDIYKNKNLDQDILLPGEKINNVISFGAKADGKFDCTQAFMDAWRATCHSKVQARLLVPEGTFVLSSMFFAGPCSTPEPVTIQVVGTIAATTDLSEYENNEWLFFEDMDGIKIIGGGTFDGVGKESWKTATDCKADPSATCIRNPSSIYFHRIKNGIIQNVTSTNPKGFHIFVTNCANIRLRRLNLSAPEESPNTDGIHISQSIDVEVARNTIETGDDCIAMLHGSHQVSIDNVSCGPGHGISIGSLGKVEEELEVKDIQVKNVSMVGTENGVRIKTWPDRYAVNASNITFSDISMQNVKNPIVIDQEYQCSSKCKASLVKIKDVVFSNIKGTTTSPIAVDLRCSSKFPCESIKLENIGLSLNSKPTGSRCANIKPIYKGLQNPPGCL* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0109 419 Pfam Glycosyl hydrolases family 28 79 406 IPR000743 GO:0004650|GO:0005975
Vra5g0109 419 PANTHER - 4 418 - -
Vra5g0109 419 SUPERFAMILY Pectin lyase-like 49 419 IPR011050 -
Vra5g0109 419 ProSitePatterns Polygalacturonase active site. 264 277 IPR000743 GO:0004650|GO:0005975
Vra5g0109 419 PANTHER POLYGALACTURONASE 4 418 - -
Vra5g0109 419 SMART pbh1 317 338 IPR006626 -
Vra5g0109 419 SMART pbh1 287 308 IPR006626 -
Vra5g0109 419 SMART pbh1 207 233 IPR006626 -
Vra5g0109 419 SMART pbh1 184 204 IPR006626 -
Vra5g0109 419 SMART pbh1 234 277 IPR006626 -
Vra5g0109 419 Gene3D - 47 416 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0109 Vra-Chr5 876759 878604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0109 53 418 Glycoside Hydrolase AT4G18180 40.519 1.36e-97 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0109 K01213 - gmx:106796220 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0109 5 876759 878604 Vra5g0109 5 876759 878604 ECH
Vra7g2820 7 48391241 48393771 Vra5g0109 5 876759 878604 PCT