Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2810 ATGCTAGTAGCATTACTCTTGCTGCTGTCGCTAAGCAATGAAGTCCGAGTCAATGGGCAGTGTGAGCATAATCCAGCACCAAAGCCAAGACCGCACACCGTGTCCATCCTTGAGTTTGGAGCGGTTGGGGATGGTAAAACATTGAACACTATTGCATTCCAGAATGCAATCTTCTATCTCAAGTCATTTGCTGACAAGGGTGGTGCTCAGTTATACGTGCCACCAGGAACATGGTTGACTAAAAGTTTCAATCTTACTAGTCATCTGACACTGTTCTTGGAAAAAGGTGCTGTCATTCTTGGATCTCAGGATCCATTTCACTGGGAAGTTGTTGATCCATTACCTTCTTATGGTCGAGGAGTTGAAGTTCCCGGGGGAAGATATCAGAGTTTAATAAATGGATACATGTTAGATGATGTGGTGATAACAGGTAATAGTGGAATCATTGATGGCATGGGATTGGCATGGTGGGAATTGTTTAGCTCTCATTCCCTGAACTACAGCCGTCCCCATATTATTGAATTAGTGGCATCTGATCATGTGGTAGTTTCAAATCTTACATTCTTGAATGCCCCTGCATATAGCATCCACCCAGTTTATTGCAGCAATGTACATATTTACAATGTTTCAATTTCTGCTCCTCCAGAATCCCCCTATACCATTGGCATAGTACCAGATTCTTCTGATCATGTTTGTATAGAGGATTGTGTCATTGAAACGGGTTATGATGCAATTGCCCTCAAAAGTGGCTGGGACGAATATGGCATTGCCTATGGCAAGCCAACTGAGAATGTACACATCAGAAGGGTGCATTTGCAAGCTTCTTATGGGTCTACTATTGCATTTGGAAGTGACATGTCTGGTGGCATTTCAAATATTCTTGTGGAGAATGTTTATCTTTACAATTCAAGGAGTGGCATTGAATTCAGAACTATGAGGGGTAGAGGTGGTTATATCAAGGAAATAGTCATATCAGAGATAGAAATGGAGAATATATACACTGCAATGGCCGCCACAGGTTATTGTGGATCTCATCCTGATGACAAATTTGATCCAAATGCTCTTCCACTTTTGGACCACATTATTTTCCAAGATATGATTGGCACAAACATCACTATTGCTGGAAGCTTTGCCGGTCTAGAAGAATCTCCCTTCACAAACATATGCCTTTCCAACATAAATTTATCTATAAATGCAGTTTCTTCCGTTCCTTGGGAATGTTCAAATATCTCTGGATTTTCAGATTCTGTTCTTCCCAAACCCTGTCCTGATCTCGAGACCCTTTCAGATTGTCTCTCCAATCTGAGTGTCAAGGGAAAAACTGCGGACATGTGA 1335 0.4165 MLVALLLLLSLSNEVRVNGQCEHNPAPKPRPHTVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGTWLTKSFNLTSHLTLFLEKGAVILGSQDPFHWEVVDPLPSYGRGVEVPGGRYQSLINGYMLDDVVITGNSGIIDGMGLAWWELFSSHSLNYSRPHIIELVASDHVVVSNLTFLNAPAYSIHPVYCSNVHIYNVSISAPPESPYTIGIVPDSSDHVCIEDCVIETGYDAIALKSGWDEYGIAYGKPTENVHIRRVHLQASYGSTIAFGSDMSGGISNILVENVYLYNSRSGIEFRTMRGRGGYIKEIVISEIEMENIYTAMAATGYCGSHPDDKFDPNALPLLDHIIFQDMIGTNITIAGSFAGLEESPFTNICLSNINLSINAVSSVPWECSNISGFSDSVLPKPCPDLETLSDCLSNLSVKGKTADM* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2810 444 Pfam Pectate lyase superfamily protein 34 91 IPR024535 -
Vra7g2810 444 Pfam Glycosyl hydrolases family 28 131 411 IPR000743 GO:0004650|GO:0005975
Vra7g2810 444 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 2 434 - -
Vra7g2810 444 Gene3D - 12 414 IPR012334 -
Vra7g2810 444 SUPERFAMILY Pectin lyase-like 25 424 IPR011050 -
Vra7g2810 444 SMART pbh1 228 249 IPR006626 -
Vra7g2810 444 SMART pbh1 178 200 IPR006626 -
Vra7g2810 444 SMART pbh1 201 227 IPR006626 -
Vra7g2810 444 SMART pbh1 290 311 IPR006626 -
Vra7g2810 444 SMART pbh1 262 284 IPR006626 -
Vra7g2810 444 PANTHER PECTIN LYASE-RELATED 2 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2810 Vra-Chr7 48319108 48322190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2810 30 437 Glycoside Hydrolase AT3G06770 64.461 0.0 552
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2810 - - gmx:100802343 824.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2810 7 48319108 48322190 Vra7g2810 7 48319108 48322190 ECH
Vra7g2810 7 48319108 48322190 Vra5g0102 5 805333 808285 PCT