Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0102 ATGTTTGTGGCATTGCTCTTGCTGGTGGCATTGAGCAATGCCGTGAGAGTTAGCGGAGATGGTGGGCAATGTGGTTCCAACCCAACACTAGACCCAAGACCACACAGTGTCTCCATTTTGGAGTTTGGTGCGGTTGGAGATGGTAGAACACTCAACACCATTGCATTCCAGAACGCCATCTTCTATCTTAAGTCATTTGCCGATAAGGGTGGCGCTCAGCTCTATGTTCCTCCCGGTAAATGGCTCACCGGAAGCTTCAATCTTACCAGCCATCTCACCCTCTTTTTGGAAAAAGGTGCTGTCATTATTGGATCTCAGGATCCATCTCATTGGGATGTTGTTGAACCCTTGCCTTCGTATGGCCGAGGCCTTGAAGTTCCCGGGGGAAGATATCAGAGCTTGATAAATGGATACATGTTACATGATGTGGTTGTAACAGGTAATAATGGAACCATTGATGGCATGGGAGTGGTTTGGTGGGAGTGGTATAGCTCCCATTCCTTGAACCATAGCCGTCCTCATCTGGTTGAAATTGTGGCATCTGATAATGTGGTGGTTTCAAATCTTACATTCTTGAATGCCCCAGCTTATAGCATACACCCAGTCTATTGCAGCCATGTACATATTCAAAATGTTTCAATCTCTGCTCCTCCAGAATCCCCTTATACTGTTGGTATAGTGCCAGATTCTTCTGAATATGTGTGTATAGAAGATTGTATTGTTGGCATGGGATTTGATGCAATTTCTCTTAAAAGTGGCTGGGATGAGTATGGCATTGCCTATGGCAGGCCAACTGAGAATGTGCACATCAGAAGGGTGCATCTTCATGCATTTTCTGGGTCTGCTCTTGCATTTGGAAGTGACATGTCTGGTGGCATTTCAAATGTTGTAGTGGAGCATGCTCATGTTATGAAATCAAACAGTGGCATTGAGTTTAGAACCACAAGAGGAAGAGGTGGTTATATGAAAGATATTGTTATATCAGACATAGAAATGGAAAATGTGCACACAGCAATTGCTGCCACTGGTAACTGTGGGTCTCATCCTGATGACAATTTTGATCCAAATGCACTCCCACTTTTGCATCACATTACATTGAGAGATGTCACAGGCACAAACATTACCATTGCTGGAAACTTTACTGGAATAGAGGAATCCCCTTTCACAAACATATGCCTTTCCAACATAACCTTGTCAACAAATTCTGTTTCTCCAATGACATGGGAATGCTCAAATGTGTCTGGATTTTCAGACTCAGTGCTCCCAGAACCTTGTCCTGAACTTGGAAACCCCTCATATGATTCTTCTTCCTCCTGTTTCTACCTTGTGAGTATCAGTGGAAAAACTGCAGTGCAGTGA 1359 0.4386 MFVALLLLVALSNAVRVSGDGGQCGSNPTLDPRPHSVSILEFGAVGDGRTLNTIAFQNAIFYLKSFADKGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGAVIIGSQDPSHWDVVEPLPSYGRGLEVPGGRYQSLINGYMLHDVVVTGNNGTIDGMGVVWWEWYSSHSLNHSRPHLVEIVASDNVVVSNLTFLNAPAYSIHPVYCSHVHIQNVSISAPPESPYTVGIVPDSSEYVCIEDCIVGMGFDAISLKSGWDEYGIAYGRPTENVHIRRVHLHAFSGSALAFGSDMSGGISNVVVEHAHVMKSNSGIEFRTTRGRGGYMKDIVISDIEMENVHTAIAATGNCGSHPDDNFDPNALPLLHHITLRDVTGTNITIAGNFTGIEESPFTNICLSNITLSTNSVSPMTWECSNVSGFSDSVLPEPCPELGNPSYDSSSSCFYLVSISGKTAVQ* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0102 452 Gene3D - 26 418 IPR012334 -
Vra5g0102 452 PANTHER PECTIN LYASE-RELATED 2 446 - -
Vra5g0102 452 SUPERFAMILY Pectin lyase-like 32 428 IPR011050 -
Vra5g0102 452 SMART pbh1 293 314 IPR006626 -
Vra5g0102 452 SMART pbh1 181 203 IPR006626 -
Vra5g0102 452 SMART pbh1 356 378 IPR006626 -
Vra5g0102 452 SMART pbh1 265 287 IPR006626 -
Vra5g0102 452 SMART pbh1 322 343 IPR006626 -
Vra5g0102 452 SMART pbh1 204 230 IPR006626 -
Vra5g0102 452 SMART pbh1 231 252 IPR006626 -
Vra5g0102 452 Pfam Glycosyl hydrolases family 28 135 414 IPR000743 GO:0004650|GO:0005975
Vra5g0102 452 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 2 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0102 Vra-Chr5 805333 808285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0102 1 440 Glycoside Hydrolase AT3G16850 63.801 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0102 - - gmx:100777503 863.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0102 5 805333 808285 Vra5g0102 5 805333 808285 ECH
Vra7g2810 7 48319108 48322190 Vra5g0102 5 805333 808285 PCT