Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2638 ATGGTGGAGACCTCCACGCTAGGGCGCTTCCACCACCAAAGGCTCGACCTTCGCCGCTGGCTCCCCACCTTCCTCACCTCGCACAAAACCCTCTTCACCGTGCTCTGGATCGCCGCCTTCGCCTCCCTTTTCCTGTGGCAGAGGAACATTGTCGGCGGCTTCCTCGTCTTCGGCGCTCCTCCCGCCAGGCCCATGCCCAAGCTCCGCCCCACCGCCTTCAATTTGACGGATTTCGGAGGTGTCGGTGATGGCGTCACTATCAACACCGAGGCCTTCGAGAGGGCGGTTTCCGCGATTTCGAAGTTTGGGAAGAAAGGCGGTGCGCAGTTAAACGTGCCTCCCGGACGCTGGCTTACGGCGCCGTTTAATCTCACTAGCCATATGACTTTGTTTCTAGCTCAAGATGCTGTTATTCTCGGCATTGATGATGAAAAATATTGGCCACTGATGGCTCCATTGCCTTCATATGGGTATGGGAGAGAGCATCCTGGGCCACGATATGGCAGTTTGATTCATGGTCAAAATCTTAAAGATGTTGTGATAACAGGGCATAACGGTACCATAAATGGCCAAGGACAAGCATGGTGGCAAAAATTTCGCCAGAAGCGTCTCAACCACACTAGGGGGCCACTTGTTCAGATCATGTGGTCTAGTGACATTGTGATCACTAACATTACTTTGCGTGACTCTCCTTTCTGGACACTTCATCCGTATGACTGCAAAAACATCACAATAAAAGGTGTAACTATACTGGCTCCGGTGTTTGAAGCTCCAAATACTGATGGCATAGATCCTGACTCTTGTGAGGACATGTTGATAGAGGACTGTTACATAAGTGTGGGAGATGATGCAATTGCAATAAAAAGTGGCTGGGATCAGTATGGAATTTCATATGGAAGGCCTTCCATGAATATAATGATCCGAAACCTTGTTCTTCGCTCTATGGTCAGTGCTGGCATCTCAATAGGCAGTGAGATGTCTGGTGGAGTATCCAATATCACGGTGGAGAATGTTGTTGTGTGGGATTCTAGACGTGGTGTGAGGATCAAGACCGCCCCTGGACGAGGAGGATACGTGCGCCAAATAACTTATCGGAATCTGACATTTGAGAATGTCCGTGTTGGAATTGTGATGAAGACAGATTACAATGAACACCCAGATGATGGGTATGAACCCACGGCACTCCCAATTCTGACAGACATAAGCTTTACCACTATCCATGGCCATGGGGTTCGCGTGCCAGTACGTATACACGGCAGTGAAGAAATTCCTGTGAAAAATGTGAGTTTTCAAGACATGTCAGTTGGTCTAACCTACAAGAAGAAACATATCTTTCAGTGTGCCTTTGTTGAAGGCCGTGTAATAGGGACCATCTTTCCTGCTCCCTGTGAGAACCTTGATCGGTACAATGAGCATGGACATCTGTTTAAGCGTTCTTCGTCTCAGAATGTCACAGATATAGATTATGATTTTTGA 1476 0.4837 MVETSTLGRFHHQRLDLRRWLPTFLTSHKTLFTVLWIAAFASLFLWQRNIVGGFLVFGAPPARPMPKLRPTAFNLTDFGGVGDGVTINTEAFERAVSAISKFGKKGGAQLNVPPGRWLTAPFNLTSHMTLFLAQDAVILGIDDEKYWPLMAPLPSYGYGREHPGPRYGSLIHGQNLKDVVITGHNGTINGQGQAWWQKFRQKRLNHTRGPLVQIMWSSDIVITNITLRDSPFWTLHPYDCKNITIKGVTILAPVFEAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGISYGRPSMNIMIRNLVLRSMVSAGISIGSEMSGGVSNITVENVVVWDSRRGVRIKTAPGRGGYVRQITYRNLTFENVRVGIVMKTDYNEHPDDGYEPTALPILTDISFTTIHGHGVRVPVRIHGSEEIPVKNVSFQDMSVGLTYKKKHIFQCAFVEGRVIGTIFPAPCENLDRYNEHGHLFKRSSSQNVTDIDYDF* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2638 491 Pfam Glycosyl hydrolases family 28 168 450 IPR000743 GO:0004650|GO:0005975
Vra7g2638 491 SMART pbh1 330 351 IPR006626 -
Vra7g2638 491 SMART pbh1 240 267 IPR006626 -
Vra7g2638 491 SMART pbh1 302 324 IPR006626 -
Vra7g2638 491 SMART pbh1 268 289 IPR006626 -
Vra7g2638 491 SMART pbh1 359 380 IPR006626 -
Vra7g2638 491 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 21 489 - -
Vra7g2638 491 PANTHER PECTIN LYASE-RELATED 21 489 - -
Vra7g2638 491 Gene3D - 62 452 IPR012334 -
Vra7g2638 491 SUPERFAMILY Pectin lyase-like 61 464 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2638 Vra-Chr7 46611380 46618966 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2638 9 490 Glycoside Hydrolase AT1G19170 73.535 0.0 766
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2638 - - gmx:100818529 940.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2638 7 46611380 46618966 Vra7g2638 7 46611380 46618966 ECH
Vra7g2638 7 46611380 46618966 Vra5g0243 5 2231027 2234207 PCT