Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0243 ATGGTGGAGAATTCAGGGGTACTCGGGTGGTTCCTCCTCAACCCCAAAACGCCACCTTTCGCTTCTCACAAGACCCTCTTCGCGTTCCTGTGGGTGGCGGCGCTGGCCTCGCTTTTCGTCTGGCAGAGGAACACGATCAGCGGCTTTCTGGTGCTGGGTGGTGTTCCGGTGCAGCCGCCGCCGAAGCTGCGGCCCGTGGTTTTCTGTTTGACTGAGTTTGGTGGGGTCGGTGACGGCGTTACTCTCAACACTGAGGCGTTTGAGAGAGGTGTTAGGGCCATTTCCAAGTTGGGGAATAAGGGTGGCGGCCAACTCACTGTGCCACCTGGACGTTGGCTCACAGCACCCTTCAACCTCACCAGCCACATGACTCTGTTTCTTGCTCCTGATGCGGTTATACTTGCAATTCAGGACGAAAAGTATTGGCCACTGATGCCTGCATTGCCTTCATATGGGTATGGAAGGGAGCATCCTGGGCCTCGATATACCAGTTTGATCCACGGTCAAAATCTTAGAGATGTTGTCATAACAGGGCATAATGGTACCATAAATGGACAGGGACAAACATGGTGGACAAAATATCGGCAAAAGATTCTGAACCACACTAGGGGGCCACTTGTTCAGATATTATGGTCTAGTGACATTGTGATCTCAAATATTACTTTGCGTGACTCTCCTTTTTGGACACTTCATCCGTATGACTGCAAAAATGTTACAGTGAAAAATGTCACTATATTGGCTCCTGTATATCACGCTCCAAATACTGATGGCATAGATCCTGATTCTTGTGAGGATATGTTGATAGAGGACTGTTACATAAGTGTGGGGGATGATGCAATTGCAATAAAAAGTGGATGGGATCAATATGGAATTACTTATGGGAGGCCTTCCAAGAATATAGTGATTCGAAACCTTGTTGTTCGATCTAATGTCAGTGCTGGGATCTCAATAGGCAGTGAGATGTCTGGTGGGGTATCCAACGTGCTGGTGGAGAACATTCTGGTATGGGAATCAAGACGTGCCATGAGAATCAAGACAGCACCAGGAAGAGGTGGCTACGTGCGCCAAATAACTTACAGGAACCTAGTTTTCAAAAACGTGCGTGTTGGAATTGTGATAAAGACAGATTACAATGAACACCCTGGTGCTGGATACGATCCAAAAGCATTTCCAATACTGAGAGACATAAGGTTCATCAATATCCGTGGCCAAGGAGTTCGTGTGCCAGTTCGAATTCAAGGCAGTGAACAGATTCCAATAAGAAATGTGACATTCCAGAACATGAAGGTTGGCACAACCTACAAGAAGAAGCATATCTTCCAGTGTGCCTTTGTCCAAGGTCAGGTAATAGGGACCATCTCTCCCTCTCCCTGTGACAGCTTTGATCGGTACGATGAGCAAGGGAAGCTTGTTAAGCATGCTGCTTCGCAGAATGTCACAGACATAGATTATGAAATTTGA 1461 0.473 MVENSGVLGWFLLNPKTPPFASHKTLFAFLWVAALASLFVWQRNTISGFLVLGGVPVQPPPKLRPVVFCLTEFGGVGDGVTLNTEAFERGVRAISKLGNKGGGQLTVPPGRWLTAPFNLTSHMTLFLAPDAVILAIQDEKYWPLMPALPSYGYGREHPGPRYTSLIHGQNLRDVVITGHNGTINGQGQTWWTKYRQKILNHTRGPLVQILWSSDIVISNITLRDSPFWTLHPYDCKNVTVKNVTILAPVYHAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGITYGRPSKNIVIRNLVVRSNVSAGISIGSEMSGGVSNVLVENILVWESRRAMRIKTAPGRGGYVRQITYRNLVFKNVRVGIVIKTDYNEHPGAGYDPKAFPILRDIRFINIRGQGVRVPVRIQGSEQIPIRNVTFQNMKVGTTYKKKHIFQCAFVQGQVIGTISPSPCDSFDRYDEQGKLVKHAASQNVTDIDYEI* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0243 486 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 17 484 - -
Vra5g0243 486 SMART pbh1 325 346 IPR006626 -
Vra5g0243 486 SMART pbh1 263 284 IPR006626 -
Vra5g0243 486 SMART pbh1 297 319 IPR006626 -
Vra5g0243 486 SMART pbh1 235 262 IPR006626 -
Vra5g0243 486 SMART pbh1 388 410 IPR006626 -
Vra5g0243 486 SMART pbh1 354 375 IPR006626 -
Vra5g0243 486 SUPERFAMILY Pectin lyase-like 58 459 IPR011050 -
Vra5g0243 486 Pfam Glycosyl hydrolases family 28 163 445 IPR000743 GO:0004650|GO:0005975
Vra5g0243 486 Gene3D - 56 450 IPR012334 -
Vra5g0243 486 PANTHER PECTIN LYASE-RELATED 17 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0243 Vra-Chr5 2231027 2234207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0243 20 486 Glycoside Hydrolase AT3G42950 72.521 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0243 - - gmx:100800910 915.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2638 7 46611380 46618966 Vra5g0243 5 2231027 2234207 PCT