Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2617 ATGATTCTCATTATCTTCCTCGTTTTTTCTCTTTTCTCCTTCTCCCATGCTTCTGTCCTAGATTTCTGCGTGGCAGATCTTGCAGGTCCTATTGGTCCTGCAGGATACTCCTGCAAGAAGCCTTCAAAGGTCACAGCAGATGATTTTGCTTACAGTGGCCTTGCCATTGCTGGTAACACCTCAAACATTATCAAAGCTGCAGTAACACCTGCATTTGATGCTCAGTTTCCTGGTGTAAATGGCCTTGGCATATCCGCAGCCCGCCTGGACTTGGCAAGAGGTGGAGTTATACCACTTCATACTCATCCCGGAGCTTCAGAATTACTTGTTGTAATACAAGGAAGCATTCTGGCAGGATTCATTTCATCTGACAACTCTGTCTACATCAAAAAACTTAATAAGGGGGATGTTATGGTATTCCCTCAAGGCTTGCTGCACTTCCAAATCAATGCAGGTGGTTCTTCAGCCCTGGCTATTGTTAGCTTCAGTAGCTCCAACCCTGGTCTGCAAATTCTGGACTTTGCTTTGTTCAAAAGTAATTTCCCCACACCACTGATAGTGGAAACCACTTTCCTTGATGCTGCTCTGGTGAAGAAGCTTAAGGGTGTTCTTGGAGGTTCAGGCTAA 627 0.4514 MILIIFLVFSLFSFSHASVLDFCVADLAGPIGPAGYSCKKPSKVTADDFAYSGLAIAGNTSNIIKAAVTPAFDAQFPGVNGLGISAARLDLARGGVIPLHTHPGASELLVVIQGSILAGFISSDNSVYIKKLNKGDVMVFPQGLLHFQINAGGSSALAIVSFSSSNPGLQILDFALFKSNFPTPLIVETTFLDAALVKKLKGVLGGSG* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2617 208 CDD cupin_OxOx 15 204 - -
Vra7g2617 208 SMART Cupin_1_3 52 198 IPR006045 -
Vra7g2617 208 Pfam Cupin 54 182 IPR006045 -
Vra7g2617 208 Gene3D Jelly Rolls 16 207 IPR014710 -
Vra7g2617 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 5 204 - -
Vra7g2617 208 SUPERFAMILY RmlC-like cupins 19 202 IPR011051 -
Vra7g2617 208 PRINTS Germin signature 100 120 IPR001929 GO:0030145
Vra7g2617 208 PRINTS Germin signature 130 150 IPR001929 GO:0030145
Vra7g2617 208 PRINTS Germin signature 163 178 IPR001929 GO:0030145
Vra7g2617 208 ProSitePatterns Germin family signature. 95 108 IPR019780 GO:0030145
Vra7g2617 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 5 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2617 Vra-Chr7 46419939 46420948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2617 1 207 Miscellaneous Gene Families AT5G20630 68.750 4.44e-97 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2617 - - gmx:100800387 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2617 7 46419939 46420948 Vra7g2617 7 46419939 46420948 ECH
Vra7g2617 7 46419939 46420948 Vra5g0265 5 2433229 2434213 PCT