Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0265 ATGAAGATAGTTCTGGGCATCTTCTTTTGTTTATCACTGCTCTCTCTCTCCCACGCTTCTGTGGTAGATTTCTGTGTGGCAGATTACACAGCTCCCAATGGCCCTGCAGGCTACTCATGCAAGAAGCCTGCACACGTGACAGTGAATGACTTTGTCTACTCTGGCCTTGGCACTGCTGGCAACACCTCAAACATCATCAAAGCTGCAGTGACTCCAGCATTTGATGCTCAGTTTCCTGGTGTCAATGGCCTTGGCATTTCTGTTGCACGTTTGGACTTGGCACCCGATGGGGTTATCCCACTCCACACACACCCTGGAGCCTCAGAACTGTTGGTTGTTGTAGAGGGTCAAATCTGTGCTGGATTCGTTGATTCCGGCAACAATGTGTACCTCAAAACCCTCGAAAAGGGTGACATCATGGTGTTCCCTCAGGGCTTGCTGCACTTCCAAATCAACTCTGGTAAGTCTCAGGCTTTAGCTTTTGTGAGCTTCAGCAGTGCCAACCCTGGCCTCCAGATTCTCGACTTTGCTTTGTTCAAGAGTGACTTCCCCACTGAACTCATCACCCAAACCACTTTCATTGATGCTGCTGTGGTCAAGAAGCTCAAGGGTGTTCTTGGAGGATCAGGTTAA 633 0.4929 MKIVLGIFFCLSLLSLSHASVVDFCVADYTAPNGPAGYSCKKPAHVTVNDFVYSGLGTAGNTSNIIKAAVTPAFDAQFPGVNGLGISVARLDLAPDGVIPLHTHPGASELLVVVEGQICAGFVDSGNNVYLKTLEKGDIMVFPQGLLHFQINSGKSQALAFVSFSSANPGLQILDFALFKSDFPTELITQTTFIDAAVVKKLKGVLGGSG* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0265 210 PRINTS Germin signature 102 122 IPR001929 GO:0030145
Vra5g0265 210 PRINTS Germin signature 132 152 IPR001929 GO:0030145
Vra5g0265 210 PRINTS Germin signature 165 180 IPR001929 GO:0030145
Vra5g0265 210 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 10 206 - -
Vra5g0265 210 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 10 206 - -
Vra5g0265 210 Pfam Cupin 55 198 IPR006045 -
Vra5g0265 210 ProSitePatterns Germin family signature. 97 110 IPR019780 GO:0030145
Vra5g0265 210 CDD cupin_OxOx 18 206 - -
Vra5g0265 210 SUPERFAMILY RmlC-like cupins 21 204 IPR011051 -
Vra5g0265 210 SMART Cupin_1_3 54 200 IPR006045 -
Vra5g0265 210 Gene3D Jelly Rolls 18 209 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0265 Vra-Chr5 2433229 2434213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0265 1 209 Miscellaneous Gene Families AT5G20630 69.048 6.79e-103 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0265 - - gmx:100806553 335.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0265 5 2433229 2434213 Vra5g0265 5 2433229 2434213 ECH
Vra7g2617 7 46419939 46420948 Vra5g0265 5 2433229 2434213 PCT