Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2567 ATGGCTCTGAATTACCCTTCTTCAACCTGCTTCATACTACTTCTAGTAACCATAACCCGTTTGATATACACAGTGGGCAAAACCGAGCAACGGAAAGCTCTGATTCTTCCAGATCTTGACATTGAAAATATATTCCATAAGCTTCGTGATGACCCCGAAACCATTCAGATGGCTTCTACGGACTACGGCCATATCGTGCATGAGCTCCCGGCAGCTGTCTTTCATCCATCTTCCATAGATGACATAGCCACCTTGATAAAAACCTCCTACAACAGCTTTGTCCCCTTTCACATAGCAGCGAGGGGCCAAGGCCACTCCACCCAAGGACAAGCCATGGCTCGTGATGGGGTAGTGGTTGACATGGCCACACTGAGAAAACAAAGAAATGGGGTTTCGATCACTGTCTCTAAAGACCCTTTGATAGGTCACTATGCTGATGTTGGAGGGGAACAACTCTGGATTGATGTGCTACATGCTTCACTAGAACATGGACTTGCACCCGTTTCTTGGACTGATTACTTGTACTTGACCGTGGGAGGAACACTTTCCAACGCTGGAATCAGTGGCCAGAGTTTCCGCTATGGACCTCAAATCAGCAACGTTCATGAAATGGATGTTATCACAGGAAAAGGAGAGTTCGTAACCTGCTCTACCCAGAAGAACTTGGAGTTATTCAACGCAGTTCTTGGAGGCTTGGGACAATTTGGAGTGATAGCAAGGGCGAGAATTGCTCTTGAGGCAGCACCCAAAAGGGTTAAGTGGGTCAGACTACTTTATAGTGACTTTTCTGCTTTTACCGAAGACCAGGAACGATTAATCTCAATCAATGGAAAGAAACAAAAGAATGCATTGGATTTTCTGGAAGGGATGCTGCTAATGAACCAAGGCCCCATAAATAATTGGAGATCCTCTTTCTTCCCTCTATCTGACCATCCCAGAATAGCTTCATTAATAACTGAACACAGCATCCTCTACTGTCTTGAAGTGGCTAAATATTATGACGACCAAACCGAGAAAAATCTGGACAAGGAAATTCAAGTTCTGCTCCAAGGGCTGGCCTATATCCCCGGATTTTATTATGAGAAAAATGTCTCATACGTTGAGTTCTTGAATAGAGTTCGAAGTGGAGAGTTGAAGCTTCAGTCACAAGGACTGTGGGAGGTTCCTCACCCGTGGCTTAATTTGTTTATACCAAAATCTCAGATCTTGGATTTTAATTCAGGAGTATTCAGAGATATAATTCTTAAAAGAAACATCTCCTCTGGACCAGTCCTGGTTTACCCTATGAATAGAAACAAATGGGACGATAGGATGTCAGCATCTATACCAGACGAGGATGTGTTCTACACAGTTGGATTTTTGCACTCAAGTGGGTTTGATTCTTGGAAGGCATATGATGCTCAAAACAGAGAAATTTTGGAGTTCTGTAGGGATGCTGGCATTAAGGTTAAGCAATATCTTCCTAATCACAGCACACAGGAAGATTGGACAAACCATTTCGGTGCCAAATGGATGAAATTCTTAGAAAGAAAACACCAGTTTGATCCAAGAATGATTCTATCACCCGGTCAAAAAATCTTCCACAAACAATTACAACCAGCGTTTTAA 1608 0.431 MALNYPSSTCFILLLVTITRLIYTVGKTEQRKALILPDLDIENIFHKLRDDPETIQMASTDYGHIVHELPAAVFHPSSIDDIATLIKTSYNSFVPFHIAARGQGHSTQGQAMARDGVVVDMATLRKQRNGVSITVSKDPLIGHYADVGGEQLWIDVLHASLEHGLAPVSWTDYLYLTVGGTLSNAGISGQSFRYGPQISNVHEMDVITGKGEFVTCSTQKNLELFNAVLGGLGQFGVIARARIALEAAPKRVKWVRLLYSDFSAFTEDQERLISINGKKQKNALDFLEGMLLMNQGPINNWRSSFFPLSDHPRIASLITEHSILYCLEVAKYYDDQTEKNLDKEIQVLLQGLAYIPGFYYEKNVSYVEFLNRVRSGELKLQSQGLWEVPHPWLNLFIPKSQILDFNSGVFRDIILKRNISSGPVLVYPMNRNKWDDRMSASIPDEDVFYTVGFLHSSGFDSWKAYDAQNREILEFCRDAGIKVKQYLPNHSTQEDWTNHFGAKWMKFLERKHQFDPRMILSPGQKIFHKQLQPAF* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2567 535 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 70 105 IPR006093 GO:0016491
Vra7g2567 535 ProSiteProfiles PCMH-type FAD-binding domain profile. 66 248 IPR016166 GO:0071949
Vra7g2567 535 SUPERFAMILY FAD-linked oxidases, C-terminal domain 249 527 IPR016164 GO:0003824|GO:0050660
Vra7g2567 535 Gene3D - 251 486 IPR016170 -
Vra7g2567 535 Gene3D - 121 250 IPR016169 -
Vra7g2567 535 Gene3D - 51 527 IPR016167 -
Vra7g2567 535 Pfam FAD binding domain 70 217 IPR006094 GO:0050660
Vra7g2567 535 PANTHER CYTOKININ DEHYDROGENASE 1, FAD AND CYTOKININ-BINDING PROTEIN 15 527 - -
Vra7g2567 535 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 249 527 IPR015345 GO:0009690|GO:0019139|GO:0050660
Vra7g2567 535 PANTHER GULONOLACTONE OXIDASE 15 527 - -
Vra7g2567 535 SUPERFAMILY FAD-binding/transporter-associated domain-like 48 245 IPR036318 GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2567 Vra-Chr7 45987526 45991416 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2567 K00279 - gmx:100787676 1008.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2567 7 45987526 45991416 Vra7g2567 7 45987526 45991416 ECH
Vra7g2567 7 45987526 45991416 Vra5g0304 5 2877834 2881733 PCT