Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0304 ATGGTAGCTGAGAACCACCCTTCCCCCACATACTTCATCCTCTTGCTCATAACAATCACGCGTTTGATCTCCACTGTCGGAAAAACCTCCCAATGGAACACTGTTTTACCTGCCGAGCTTGCCGGAGTAGACGAGGATGTCTTTCACAAGCTCCGAGGAGACTCGGAAGCTCTTCAGGGAAGAGCTTCTAAGGACTACGGCAACATAGCTCGGGAAGTCCCACTGGCGGTCTTCCACCCGGCGTCGGCGCAGGACATCGCACGGCTGCTCAAGGCGTCGTACAGGGAGGCTGTCCCCTTCAAGGTGGCGGCGAGGGGACAAGGGCACTCCACGCGGGGGCAGGCGATGGCACGTGGCGGCGTGGTGGTGGACATGGCAGGGTTCAGAGAGAGGGGCAGTGGGGTGGGGATAAGGGTGAGCAACACGGTGGACCCTTCGGTTGGTTACTTTCACTACGCTGATGTCGGAGGGGAGCAACTTTGGATCGATGTTCTTCACGCCACTCTCGAGCATGGACTTGCACCTCTCTCTTGGACTGATTACTTGTACTTGACAGTGGGAGGAACTCTCTCCAATGCTGGCATCAGTGGCCAAACCTTCCGCTTTGGTCCTCAAATCTCCACTGTTCGTGAAATGGATGTCATCACTGGAAAGGGAGAATCTGTGACCTGCTCTTCTCAGACAAATTCGGAGTTGTTTCACGCTGTTCTTGGAGGTTTAGGACAGTTTGGAATTATAACAAGGGCAAGAATTGCTCTTGCGCCAGCTCCCAAGAGGGTTAAATGGGTTAGACTTTTGTACAATGAGTTTTCTGCTTTTACAAAAGACCAAGAACAATTAATCTCAATCACTGGAAGGAAACAAAATATTGCTGTTGATTATGTGGAAGGGTCGTTGCTGATGCACCAAGGACCCATAAATAATTGGAGATCTTCTTTCTTCCCTTTAGCCGACCATGGTCGAATAATTTCACTAGTAACTCAACACAGCGTCCTCTATTGCCTAGAAATTGCCAAATATTATGATGGCCAAAGTGAAAACAATGTGGACAAGGAACTCCAAGTTTTACTCCAAGAACTGAGCTACATCCCAGGATTTTACTACGAAAAAGATGTCTCATACGTTGAGTTCTTGAACAGAGTCCGAAGTGGAGAGTTGAAGCTACAGTCACAGGGACTGTGGGATGTTCCTCACCCTTGGCTTAATTTGTTCATACCAAAATCTCAAATCATGGATTTTGACTCAGGCGTGTTCAAGAACATCATCCTTAAACGAAACATCACCACAGGACCTGTCTTGGTTTATCCCATGAATAGAAACAAGTGGGACAATAGGATGTCAGCATCAATACCAGACGAGGATATCTTCTACACAGTTGGGTTTTTGCATTCAAGTGGGTTTGATAATTGGAAGGACTATGATACTCAAAATAAAGAAATTGTGCAGTTTTGTAATGATGCTGGGATCAATATTAAGCAATATCTTCCCCACTACCGCACACAAGAAGATTGGACAAAGCATTTTGGCCCTAAATGGAGGACTTTTGTAGAAAGAAAACAGCAGTTTGATCCTAGAATGATTCTATCACCTGGACAAAGAATCTTTAACAATTAA 1614 0.4659 MVAENHPSPTYFILLLITITRLISTVGKTSQWNTVLPAELAGVDEDVFHKLRGDSEALQGRASKDYGNIAREVPLAVFHPASAQDIARLLKASYREAVPFKVAARGQGHSTRGQAMARGGVVVDMAGFRERGSGVGIRVSNTVDPSVGYFHYADVGGEQLWIDVLHATLEHGLAPLSWTDYLYLTVGGTLSNAGISGQTFRFGPQISTVREMDVITGKGESVTCSSQTNSELFHAVLGGLGQFGIITRARIALAPAPKRVKWVRLLYNEFSAFTKDQEQLISITGRKQNIAVDYVEGSLLMHQGPINNWRSSFFPLADHGRIISLVTQHSVLYCLEIAKYYDGQSENNVDKELQVLLQELSYIPGFYYEKDVSYVEFLNRVRSGELKLQSQGLWDVPHPWLNLFIPKSQIMDFDSGVFKNIILKRNITTGPVLVYPMNRNKWDNRMSASIPDEDIFYTVGFLHSSGFDNWKDYDTQNKEIVQFCNDAGINIKQYLPHYRTQEDWTKHFGPKWRTFVERKQQFDPRMILSPGQRIFNN* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0304 537 Gene3D - 60 535 IPR016167 -
Vra5g0304 537 SUPERFAMILY FAD-linked oxidases, C-terminal domain 257 536 IPR016164 GO:0003824|GO:0050660
Vra5g0304 537 PANTHER CYTOKININ DEHYDROGENASE 3 16 536 - -
Vra5g0304 537 Gene3D - 259 494 IPR016170 -
Vra5g0304 537 Gene3D - 125 258 IPR016169 -
Vra5g0304 537 PANTHER GULONOLACTONE OXIDASE 16 536 - -
Vra5g0304 537 Pfam FAD binding domain 74 225 IPR006094 GO:0050660
Vra5g0304 537 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 257 535 IPR015345 GO:0009690|GO:0019139|GO:0050660
Vra5g0304 537 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 74 109 IPR006093 GO:0016491
Vra5g0304 537 ProSiteProfiles PCMH-type FAD-binding domain profile. 70 256 IPR016166 GO:0071949
Vra5g0304 537 SUPERFAMILY FAD-binding/transporter-associated domain-like 59 255 IPR036318 GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0304 Vra-Chr5 2877834 2881733 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0304 K00279 - gmx:100804431 968.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2567 7 45987526 45991416 Vra5g0304 5 2877834 2881733 PCT