Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2566 ATGGGAAGTTATTTTAGATTTTCAAAAGCTTTTGTTGTGCTAGGGTTAGCCTTCACAGTGCTGTCACAGGCACAATCACAACCTTGGTCGTTACTCCAAGCACCAAATGACCTAACCCTGAAGCTTATTCGTGATCCTGTGATCCTTTCACTGGCCTCAACCGACTATGGCCACATAGTTCATGACAACCCTTTTGCGATATTTTCCCCATCGTCCATCAGTGACATCTCTCTGTTGATAAATTTCTCGAACTCTCTTGCCATCCCTTTCACCATAGCTCCCAGAGGGCAAGCACACTCGGTGAATGGACAAGCCATGGCAAATGATGGGGTTGTGGTAAACATGACCGAGTTGAATGGGTTCAGAAACGGGGCTGGGATTGTAGTAGTGTCTGATGGCAGAACAAATGCTCCATATGCTGATGTGGGTGGAGAACAAATTTGGATTGATGTATTGCATGCAACACTTGAGCATGGACTCACCCCACTCTCTTGGACTGATTATTTGTTCTTATCGGTTGGTGGAACTCTCTCCAATGCTGGGATCAGTGGCCAATCCTTCAGGTTTGGTCCTCAGATTTCCAATGTTCATGAATTGGATGTTGTTACAGGGAAAGGAGACCTAGTGACATGTTCTTCGGACAACAATTCAGAGTTGTTTTACGCTGTTCTAGGAGGATTAGGTCAATTTGGAATTATAACTAGGGCAAGAATAGCTCTTGGACCCGCACCAACTAGGGTGAAGTGGCTCCGTTTGCTTTACAACGATTTCTCTGCATTTTCTGCAGACCAAGAACACTTAATCTCGTTCAATGGAAGAAACGACACCATTGCTGCTGATTATGTAGAAGGTTTCCTTCTGCTAAATCAGCCACCACTGGATCTTTCTTCTTTTCCAGCACCCGATCAACCTCGTGTAACTTCCCTAGTGACACAATACGGCATTATCTATATCATAGAGCTTGTTAAATATTACGACAACAGCACACAAGAACATGTTGACGAGGATGTAAAAGTTTTGGTGGAGGGATTGAAGTTTGTTCCTACGTTTATGTTCGAAAAAGATGCATCATACGAAGAGTTCCTGAACAGAGTTCATGCCGACGAGCTTTTTCTAACATCACAAGGACTTTGGGATGTTCCTCATCCTTGGTTAAACCTCTTTGTTCCAGGATCTCGAATCTCAGATTTCGATGAAGGTGTGTTCAAGGGCATTATTCTGAAGCAAAATATCACTGCAGGAGTTGCGATAATCTACCCGATGAATCGATCCAAGTGGAATGATCAGATGTCTGCAGTTACACCTAATGAAGATGTTTTCTATACTGTGTCACTTCTTCATTCAACTGGGTTTGATAAAGTGGAGGAATTTCAAGCTCAAAACCAACAAATATTGAAGTTCTGTAAGGATGCTGGTATTGAGATCAAGCAGTATCTTCCCCAAAACAAAACAAGGAATGAATGGATCAAACAGTTTGGCTCCAAATGGAAAACATTCGAAGAAAGAAAAAATCAATTTGATCCCAACAGAATATTGTCACCTGGACAGAGAATTTTCAATTCAATATAA 1569 0.4213 MGSYFRFSKAFVVLGLAFTVLSQAQSQPWSLLQAPNDLTLKLIRDPVILSLASTDYGHIVHDNPFAIFSPSSISDISLLINFSNSLAIPFTIAPRGQAHSVNGQAMANDGVVVNMTELNGFRNGAGIVVVSDGRTNAPYADVGGEQIWIDVLHATLEHGLTPLSWTDYLFLSVGGTLSNAGISGQSFRFGPQISNVHELDVVTGKGDLVTCSSDNNSELFYAVLGGLGQFGIITRARIALGPAPTRVKWLRLLYNDFSAFSADQEHLISFNGRNDTIAADYVEGFLLLNQPPLDLSSFPAPDQPRVTSLVTQYGIIYIIELVKYYDNSTQEHVDEDVKVLVEGLKFVPTFMFEKDASYEEFLNRVHADELFLTSQGLWDVPHPWLNLFVPGSRISDFDEGVFKGIILKQNITAGVAIIYPMNRSKWNDQMSAVTPNEDVFYTVSLLHSTGFDKVEEFQAQNQQILKFCKDAGIEIKQYLPQNKTRNEWIKQFGSKWKTFEERKNQFDPNRILSPGQRIFNSI* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2566 522 ProSiteProfiles PCMH-type FAD-binding domain profile. 60 243 IPR016166 GO:0071949
Vra7g2566 522 SUPERFAMILY FAD-linked oxidases, C-terminal domain 244 520 IPR016164 GO:0003824|GO:0050660
Vra7g2566 522 Gene3D - 246 478 IPR016170 -
Vra7g2566 522 Gene3D - 115 245 IPR016169 -
Vra7g2566 522 Gene3D - 49 519 IPR016167 -
Vra7g2566 522 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 244 519 IPR015345 GO:0009690|GO:0019139|GO:0050660
Vra7g2566 522 Pfam FAD binding domain 66 212 IPR006094 GO:0050660
Vra7g2566 522 SUPERFAMILY FAD-binding/transporter-associated domain-like 42 242 IPR036318 GO:0050660
Vra7g2566 522 PANTHER CYTOKININ DEHYDROGENASE 1, FAD AND CYTOKININ-BINDING PROTEIN 12 520 - -
Vra7g2566 522 PANTHER GULONOLACTONE OXIDASE 12 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2566 Vra-Chr7 45980723 45984611 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2566 K00279 - gmx:100808553 875.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2566 7 45980723 45984611 Vra5g0305 5 2907007 2910296 PCT