Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0305 ATGGATGTGAGTAATTTAGCATTTTCCATAGCCATGGCTGTTCTATGTCTATCTAGCATCACACAAGCAAATTTCAAAATCCCCAAAGAAATAGCCAAAAAGTTTAGCAGTGACCCTGAAATCCTTTCACTGGCATCAACAGATTATGGCCACATAGTTCATGAAACTCCATTAAAAGTTTTTGAGCCATCTTCTGTGAGTGATATCTCAAGTTTGATAAATTTCTCAAACTCTCTTCCCACTCCATTCACCATAGCCACCAGAGGCAAAGCTCACTCCCTTCTAGGGCAAGCCCAGACACGAAATGGGGTGGTCTTGAACATGACTAACCTCAAAGGGTCACTGATTTCGGTTTCAAATTGTGGTCGAAAAACATCATTGAATTGTTACGCTGATGTTGGTGGTGAAGTGTTGTGGATTGATGTGTTGCATGCAACCCTAAAACGTGGACTCACACCTTTATCTTGGACTGATTATCTGTATCTGAGTGTTGGAGGAACTCTGTCAAATGCTGGAATCAGTGGCCAAGCCTTTCGATTTGGTCCTCAGATCTCTAATGTTCTTCAACTCGATGTTGTCACAGGAAAAGGAGAGCTTGTGAGTTGCTCCAGGGATAAGAATTCTGAGTTATTTTACGGTGTTCTTGGAGGATTAGGTCAATTTGGTGTAATAACCAGAGCCAGAATACCTCTAGGACCTGCACCAACCAGGGTGAAATGGCTCCATCTGCTCTACAACAACTTCAGTGCATTTTCTAGCGACCAAGAACATTTAATCTCCTTCAGTACTGCAGCAGATTATGTAGAAGGCAAGCTTCTATTCAGTCAGCCACCCCTGGAACTTTCCTTTTATCCAGATTCTGACCATCAAAGAATAACTTCACTGGTAACTCAAAATGGCATAATTTACATCATAGAACTTGTCAAATACTATGACAGCAACTCTCAAGCATTCGTGGCCAAGGATGTGGCCGATTTGGTGAAAGGGTTAAAGTTCGTACCAACATTTATGTTCAAAAAAGATGCATCGTACGAGGAGTTTCTGAATAGAGTTTACGCAGAAGAGTTATTTCTAAGGTCAAAAGGACTTTGGGAAATTCCTCACCCCTGGTTGAACATCTGGATTCCAAGATCTCGAATCTCAGATTTTAACGAAGGTGTTTTCAAGAACATTATTCTTAAGCAAAACATTTCTAGCGGAATTTCTCTGATATACCCACTGAACCGAAACAAGTGGGATGATAAGATGTCACCAGTTACACCAGATGAAGATGTTTTCTACGCTCTAAGTCTTTTGCGTTCTACAAGTTCGATGGATATGCTGGAGAAATATCAGACTCAGAACCGACAAATATTAGAGTTTTGTAAGGATGCTGGTATTAAGATCACGGAATATCTCACTGGGAACAAAACTCAACAACAATGGATGGAACACTTTGGCTCAAAATGGAAACTTTTTGCGGATAGAAAAGCTCGATTTGATCCCAAAAGAATATTGTCACCAGGACAAGGGATTTTTTCAAAGTAA 1527 0.4054 MDVSNLAFSIAMAVLCLSSITQANFKIPKEIAKKFSSDPEILSLASTDYGHIVHETPLKVFEPSSVSDISSLINFSNSLPTPFTIATRGKAHSLLGQAQTRNGVVLNMTNLKGSLISVSNCGRKTSLNCYADVGGEVLWIDVLHATLKRGLTPLSWTDYLYLSVGGTLSNAGISGQAFRFGPQISNVLQLDVVTGKGELVSCSRDKNSELFYGVLGGLGQFGVITRARIPLGPAPTRVKWLHLLYNNFSAFSSDQEHLISFSTAADYVEGKLLFSQPPLELSFYPDSDHQRITSLVTQNGIIYIIELVKYYDSNSQAFVAKDVADLVKGLKFVPTFMFKKDASYEEFLNRVYAEELFLRSKGLWEIPHPWLNIWIPRSRISDFNEGVFKNIILKQNISSGISLIYPLNRNKWDDKMSPVTPDEDVFYALSLLRSTSSMDMLEKYQTQNRQILEFCKDAGIKITEYLTGNKTQQQWMEHFGSKWKLFADRKARFDPKRILSPGQGIFSK* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0305 508 SUPERFAMILY FAD-binding/transporter-associated domain-like 34 233 IPR036318 GO:0050660
Vra5g0305 508 Pfam FAD binding domain 57 203 IPR006094 GO:0050660
Vra5g0305 508 Gene3D - 237 465 IPR016170 -
Vra5g0305 508 SUPERFAMILY FAD-linked oxidases, C-terminal domain 235 506 IPR016164 GO:0003824|GO:0050660
Vra5g0305 508 Gene3D - 108 236 IPR016169 -
Vra5g0305 508 PANTHER GULONOLACTONE OXIDASE 14 506 - -
Vra5g0305 508 ProSitePatterns Ribosome-binding factor A signature. 319 341 IPR020053 GO:0006364
Vra5g0305 508 Gene3D - 38 506 IPR016167 -
Vra5g0305 508 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 235 506 IPR015345 GO:0009690|GO:0019139|GO:0050660
Vra5g0305 508 ProSiteProfiles PCMH-type FAD-binding domain profile. 53 234 IPR016166 GO:0071949
Vra5g0305 508 PANTHER CYTOKININ DEHYDROGENASE 1, FAD AND CYTOKININ-BINDING PROTEIN 14 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0305 Vra-Chr5 2907007 2910296 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0305 K00279 - gmx:100793158 717.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2566 7 45980723 45984611 Vra5g0305 5 2907007 2910296 PCT