Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2561 ATGGAGAATTTACCAAAGGGTTTTTTTTATACCCTGCTGTTATTTTTGTGGGTCTGTGCAGTCACAGCCTCTGTGACTTATGATCACAAAGCCATTATTGTTAATGGACAGAGAAGAATTTTGATCTCAGGCTCCATCCATTACCCAAGAAGCACACCTGAGATGTGGCCAGACCTTATTCAAAAGGCCAAAGATGGAGGCTTAGATGTCATTCAAACGTATGTGTTTTGGAATGGACACGAACCTTCTCCTGGAAAGTATTATTTCGAGGATAGATACGACCTGGTTAAGTTCATCAAGGTGGTGCAGCAGGCTGGTCTCTATCTTCATCTCCGTATTGGTCCCTTCGTATGTGCTGAGTGGAACTTTGGGGGCTTTCCTGTTTGGCTCAAGTATGTTCCGGGTATTGCTTTCAGAACAGACAACGAACCTTTTAAGGCGGCAATGCGGAATTTTACTGAGAAGATTGTGAACATGATGAAGGCGGAGAAATTGTTCCAGACTCAGGGAGGTCCTATAATTATGTCACAGATAGAAAACGAATTTGGACCAGTGGAGTGGGAAATTGGTGCTCCTGGAAAAGCTTATGCCCAATGGGCTGCTCAAATGGCTGTGGGTTTAGATACTGGTGTCCCCTGGATTATGTGCAAGCAAGAAGATGCTCCGGATCCTGTTATTAACACCTGCAATGGATACTACTGTGAAAACTTCACTCCTAACAAGGAGTACAAACCCAAAATGTGGACAGAGAACTGGAGTGGCTGGTACACTGAGTTTGGTGGCGCGGTTCCTCGTAGACCTGCAGAAGACATGGCCTTCTCGGTTGCAAGATTCGTACAGAATGGCGGTTCATTTGTTAATTACTACATGTTCCATGGAGGAACTAACTTTGATCGGACATCAGGTGGCCCCTTTATTGCCACAAGCTATGACTATGATGGTCTCCTTGATGAATACGGACTTTTAAATGAGCCAAAATGGGGGCATTTGAGGGATTTGCATAAAGCAATAAAGCTGTGTGAGCCAGCTTTAGTGTCTGTCGATCCCACAGTGACATGGCCTGGTCAAAACCTTGAGGTACATGTGTTCAAGACTTCTGGTACTTGTGCTGCATTCCTAGGAAACTATGACACCAAATCTTCCGCTAAAGTTTCATTTGGAAATGGAAAATATGACCTACCACCTTGGTCTATCAGCATCCTTCCTGATTGCAAAACTGAAGTTTTCAACACTGCAAGAGTCGGTGCTCAAAGCTCTCTGCAGAAGATGACTGCTGTGAACACTGCATTTGATTGGCAGTCATACAATGAAGAGCCAGCATCGTCCAGTGAAGATGATCCCTTAACAGCATATGCACTCTGGGAGCAGGTTAATATCACCCGAGATTCTACAGATTATTTGTGGTATATGACAGATGTCAATATTGATACAAATGAAGGTTTTATAAAAAGAGGACAATCTCCTGTTCTTACCGTGATGTCAGCTGGCCATGCTTTGCATGTTTTCATCAACGGTCAACTTTCAGGTACTGTGTATGGGGGATTGGAGTTCCCTAAATTAACATTTAGTGACAGAGTGAAGCTGAGGATTGGGAATAATAAGCTATCTTTACTAAGTATTGCCGTCGGTCTCCCGAATGTTGGGATTCACTTTGAGACATGGAATGCTGGGGTGTTAGGCCCAGTCACACTAAATGGTCTAAATGAGGGGACTAGAGACTTGTCTAAACAGAAATGGTCTTACAAGATTGGTCTCAGGGGAGAAGCCTTAAACCTTAACACTGTGAGTGGGAGTAGCTCAGTTGAATGGGTAGAAGGATCATTATTGGCTAAAAAGCAGCCTTTGACATGGTACAAGACAACTTTTAGCACACCAGCAGGCAATGATCCATTGGCTCTGGACATGATTAGCATGGGAAAGGGCCAAGTATGGATAAATGGTAAAAGCATTGGACGACATTGGCCTGGATATATAGCACGCGGTGGTTGTGGGGAATGTTCCTACGCTGGAACTTACACTGAGAAAAAATGCCAGACAAACTGTAGAGAGCCCTCCCAGAGATGGTACCATATTCCTCGGTCATGGCTGAACCCAAGTGGGAACTACCTGGTTGTGTTTGAAGAATGGGGAGGAGACCCTAGTGGAATTTCTTTGGTGAAAAGAACAACAGCAAGTGTTTGTTCTGATATATATGAAGGGCAACCAACTCTAAAGAACAGGCAGATGCTGGCCAGTGGCAAAATTAATAGACCCAAGGCTCACTTGTGGTGTCCACCTGGGCTAAAAATTTCCCAGATTAAATTTGCTAGTTATGGATTGCCTCTGGGAACTTGTGGAAACTATAGAGAGGGAAGCTGCCATGCTCACAGATCATATGATGCTCCTGAAAAGAACTGCATTGGCAAGCAATCTTGCTCTGTGACTGTAGCTGCTGAAGTTTTTGGGGGAGACCCATGTCCGGGAACTGCAAAGAAGTTATCACTTGAGGCACTATGCAGCTAG 2502 0.4436 MENLPKGFFYTLLLFLWVCAVTASVTYDHKAIIVNGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEDRYDLVKFIKVVQQAGLYLHLRIGPFVCAEWNFGGFPVWLKYVPGIAFRTDNEPFKAAMRNFTEKIVNMMKAEKLFQTQGGPIIMSQIENEFGPVEWEIGAPGKAYAQWAAQMAVGLDTGVPWIMCKQEDAPDPVINTCNGYYCENFTPNKEYKPKMWTENWSGWYTEFGGAVPRRPAEDMAFSVARFVQNGGSFVNYYMFHGGTNFDRTSGGPFIATSYDYDGLLDEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVTWPGQNLEVHVFKTSGTCAAFLGNYDTKSSAKVSFGNGKYDLPPWSISILPDCKTEVFNTARVGAQSSLQKMTAVNTAFDWQSYNEEPASSSEDDPLTAYALWEQVNITRDSTDYLWYMTDVNIDTNEGFIKRGQSPVLTVMSAGHALHVFINGQLSGTVYGGLEFPKLTFSDRVKLRIGNNKLSLLSIAVGLPNVGIHFETWNAGVLGPVTLNGLNEGTRDLSKQKWSYKIGLRGEALNLNTVSGSSSVEWVEGSLLAKKQPLTWYKTTFSTPAGNDPLALDMISMGKGQVWINGKSIGRHWPGYIARGGCGECSYAGTYTEKKCQTNCREPSQRWYHIPRSWLNPSGNYLVVFEEWGGDPSGISLVKRTTASVCSDIYEGQPTLKNRQMLASGKINRPKAHLWCPPGLKISQIKFASYGLPLGTCGNYREGSCHAHRSYDAPEKNCIGKQSCSVTVAAEVFGGDPCPGTAKKLSLEALCS* 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2561 833 PRINTS Glycosyl hydrolase family 35 signature 35 52 IPR001944 GO:0004553|GO:0005975
Vra7g2561 833 PRINTS Glycosyl hydrolase family 35 signature 56 74 IPR001944 GO:0004553|GO:0005975
Vra7g2561 833 PRINTS Glycosyl hydrolase family 35 signature 111 130 IPR001944 GO:0004553|GO:0005975
Vra7g2561 833 PRINTS Glycosyl hydrolase family 35 signature 168 183 IPR001944 GO:0004553|GO:0005975
Vra7g2561 833 PRINTS Glycosyl hydrolase family 35 signature 247 262 IPR001944 GO:0004553|GO:0005975
Vra7g2561 833 PRINTS Glycosyl hydrolase family 35 signature 284 299 IPR001944 GO:0004553|GO:0005975
Vra7g2561 833 PRINTS Glycosyl hydrolase family 35 signature 304 320 IPR001944 GO:0004553|GO:0005975
Vra7g2561 833 PRINTS Glycosyl hydrolase family 35 signature 613 627 IPR001944 GO:0004553|GO:0005975
Vra7g2561 833 PRINTS Glycosyl hydrolase family 35 signature 640 656 IPR001944 GO:0004553|GO:0005975
Vra7g2561 833 Pfam Galactose binding lectin domain 755 832 IPR000922 GO:0030246
Vra7g2561 833 Gene3D - 432 576 - -
Vra7g2561 833 Gene3D - 740 833 IPR043159 -
Vra7g2561 833 SUPERFAMILY (Trans)glycosidases 24 341 IPR017853 -
Vra7g2561 833 Pfam Beta-sandwich domain in beta galactosidase 344 414 IPR041392 -
Vra7g2561 833 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 170 182 IPR019801 GO:0004553|GO:0005975
Vra7g2561 833 Gene3D Glycosidases 18 340 - -
Vra7g2561 833 PANTHER BETA-GALACTOSIDASE 12 722 - -
Vra7g2561 833 SUPERFAMILY Galactose-binding domain-like 398 568 IPR008979 -
Vra7g2561 833 Gene3D - 588 727 - -
Vra7g2561 833 Pfam Glycosyl hydrolases family 35 32 336 IPR031330 -
Vra7g2561 833 ProSiteProfiles SUEL-type lectin domain profile. 747 833 IPR000922 GO:0030246
Vra7g2561 833 PANTHER BETA-GALACTOSIDASE RELATED 12 722 IPR001944 GO:0004553|GO:0005975
Vra7g2561 833 SUPERFAMILY Galactose-binding domain-like 578 736 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2561 Vra-Chr7 45926127 45931622 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2561 12 833 Glycoside Hydrolase AT3G13750 71.377 0.0 1251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2561 - - gmx:106795462 1594.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2561 7 45926127 45931622 Vra7g2561 7 45926127 45931622 ECH
Vra7g2561 7 45926127 45931622 Vra5g0311 5 2965323 2971358 PCT