Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0311 ATGGGGAAGGGAGAGTTTCATGGAGGGGTGTTGATGCTGTTGTTTTTCTGGGTTTGTGGTGTCACAGCCTCTGTCACTTACGACCACAAAGCCATTGTGATTGATGGAAAGAGGAGAATTTTGATCTCTGGCTCCATTCACTACCCAAGAAGCACTCCTCAAATGTGGCCAGACCTCATTCAGAAGGCCAAAGATGGAGGCCTTGATGTCATTCAGACCTATGTTTTTTGGAATGGTCATGAACCTTCTCCGGGAAAATACTATTTCGAAGATAGGTATGACTTGGTTAGGTTCGTGAAGCTAGCGCAGCAAGCAGGCCTCTATGTTCATCTCCGCATTGGTCCCTACATATGTGCTGAATGGAACTTTGGGGGATTTCCTGTCTGGCTCAAGTATGTTCCTGGAATTGCTTTCAGAACAGACAACGAACCGTTCAAGGCTGCAATGCAAAAATTCACAGCGAAGATTGTTAGCTTGATGAAAGAAGAGAGGTTGTTTCAATCCCAGGGTGGTCCAATAATTTTGTCACAGATTGAAAACGAGTATGGTCCTGTGGAATGGGAAATTGGTGCTCCTGGAAAATCTTATACGAAGTGGGCTGCTCAAATGGCTGTTGGTCTAGACACTGGTGTTCCATGGGTTATGTGCAAGCAAGAAGATGCTCCTGATCCTGTTATTGACACCTGCAATGGGTTCTACTGTGAAAACTTCAAACCCAATAAGAACACCAAACCCAAAATGTGGACTGAGAATTGGACTGGCTGGTACACTGATTTTGGTGGTGCAGTCCCTATTAGACCAGCAGAAGACTTGGCATTTTCAGTTGCAAGATTCATACAAAATGGTGGTTCATTCGTTAATTACTATATGTACCATGGAGGAACTAACTTTGGTCGGACATCTGGTGGTCTCTTCATTGCCACTAGCTATGACTATGACGCACCCCTTGATGAATACGGACTTCAAAATGAACCAAAATGGGGGCATTTGAGAGCTTTGCATAAAGCAATAAAACAAAGTGAGCCTGCTTTGGTATCTACAGATCCTAAGGTGACATCGCTTGGATATAACCTTGAGGCACACGTGTTCTCAACCCCTGGTGCCTGTGCGGCATTTATTGCAAATTATGACACCAAATCCTCTGCAAAAGCTACGTTTGGAAGTGGACAATATGATCTACCACCTTGGTCTATCAGTATTCTTCCTGACTGCAAAACTGTTGTTTACAACACCGCAAGGGTTGGTAACGGCTGGGTGAAAAAGATGACTCCTGTAAACAGTGGATTTGCTTGGCAGTCATACAATGAAGAACCTGCCTCATCAAGTCAAGATGATTCCATTGCAGCAGAGGCACTCTGGGAACAGGTCAATGTGACCCGGGATTCTTCAGATTATTTGTGGTATATGACAGATGTCTACATTAATGGTAATGAAGGTTTTCTAAAGAATGGTCGATCTCCTGTTCTCACTGTAATGTCAGCAGGCCATCTGCTACATGTTTTCATTAATGGTCAACTTTCAGGAACTGTGTATGGGGGATTGGGGAATCCTAAATTAACATTTAGTGACAATGTGAACTTGAGAGTTGGCAATAACAAGCTTTCTTTACTAAGTGTTGCCGTTGGTCTCCCGAATGTTGGCGTGCACTTTGAAACATGGAATGCGGGGGTGTTAGGCCCAGTCACTCTGAAGGGTCTAAATGAAGGAACACGAGACTTGTCCCGACAGAAATGGTCTTACAAGGTAGGACTGAAAGGTGAAGCCTTGAACCTTCACACTGAAAGTGGGAGTAGCTCTGTTGAATGGATACAAGGATCATTAGTGGCTAAAAAACAACCTTTGACATGGTATAAGGCAACTTTTAGTGCACCAGCTGGCAATGACCCATTGGCTCTAGATTTGGGTAGCATGGGAAAGGGTGAAGTATGGGTCAACGGTCGCAGCATTGGTCGCCATTGGCCTGGATATATTGCACATGGCAGTTGTAATGCTTGCAACTATGCTGGATATTATACCGATCAAAAATGCAGGACAAATTGTGGAAAACCATCTCAGAGATGGTATCATGTTCCTCGTTCATGGCTGAACTCGGGTGGTAACTCCTTGGTCGTGTTTGAAGAATGGGGAGGTGATCCTAATGGAATTGCTTTGGTAAAAAGAACCTAA 2166 0.4418 MGKGEFHGGVLMLLFFWVCGVTASVTYDHKAIVIDGKRRILISGSIHYPRSTPQMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEDRYDLVRFVKLAQQAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIAFRTDNEPFKAAMQKFTAKIVSLMKEERLFQSQGGPIILSQIENEYGPVEWEIGAPGKSYTKWAAQMAVGLDTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKNTKPKMWTENWTGWYTDFGGAVPIRPAEDLAFSVARFIQNGGSFVNYYMYHGGTNFGRTSGGLFIATSYDYDAPLDEYGLQNEPKWGHLRALHKAIKQSEPALVSTDPKVTSLGYNLEAHVFSTPGACAAFIANYDTKSSAKATFGSGQYDLPPWSISILPDCKTVVYNTARVGNGWVKKMTPVNSGFAWQSYNEEPASSSQDDSIAAEALWEQVNVTRDSSDYLWYMTDVYINGNEGFLKNGRSPVLTVMSAGHLLHVFINGQLSGTVYGGLGNPKLTFSDNVNLRVGNNKLSLLSVAVGLPNVGVHFETWNAGVLGPVTLKGLNEGTRDLSRQKWSYKVGLKGEALNLHTESGSSSVEWIQGSLVAKKQPLTWYKATFSAPAGNDPLALDLGSMGKGEVWVNGRSIGRHWPGYIAHGSCNACNYAGYYTDQKCRTNCGKPSQRWYHVPRSWLNSGGNSLVVFEEWGGDPNGIALVKRT* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0311 721 Pfam Glycosyl hydrolases family 35 32 336 IPR031330 -
Vra5g0311 721 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 170 182 IPR019801 GO:0004553|GO:0005975
Vra5g0311 721 Gene3D - 591 721 - -
Vra5g0311 721 PANTHER BETA-GALACTOSIDASE 5 721 - -
Vra5g0311 721 PRINTS Glycosyl hydrolase family 35 signature 35 52 IPR001944 GO:0004553|GO:0005975
Vra5g0311 721 PRINTS Glycosyl hydrolase family 35 signature 56 74 IPR001944 GO:0004553|GO:0005975
Vra5g0311 721 PRINTS Glycosyl hydrolase family 35 signature 111 130 IPR001944 GO:0004553|GO:0005975
Vra5g0311 721 PRINTS Glycosyl hydrolase family 35 signature 168 183 IPR001944 GO:0004553|GO:0005975
Vra5g0311 721 PRINTS Glycosyl hydrolase family 35 signature 247 262 IPR001944 GO:0004553|GO:0005975
Vra5g0311 721 PRINTS Glycosyl hydrolase family 35 signature 284 299 IPR001944 GO:0004553|GO:0005975
Vra5g0311 721 PRINTS Glycosyl hydrolase family 35 signature 304 320 IPR001944 GO:0004553|GO:0005975
Vra5g0311 721 PRINTS Glycosyl hydrolase family 35 signature 612 626 IPR001944 GO:0004553|GO:0005975
Vra5g0311 721 PRINTS Glycosyl hydrolase family 35 signature 639 655 IPR001944 GO:0004553|GO:0005975
Vra5g0311 721 SUPERFAMILY (Trans)glycosidases 25 339 IPR017853 -
Vra5g0311 721 PANTHER BETA-GALACTOSIDASE RELATED 5 721 IPR001944 GO:0004553|GO:0005975
Vra5g0311 721 Gene3D - 431 575 - -
Vra5g0311 721 SUPERFAMILY Galactose-binding domain-like 577 716 IPR008979 -
Vra5g0311 721 Gene3D Glycosidases 19 342 - -
Vra5g0311 721 Pfam Beta-sandwich domain in beta galactosidase 344 414 IPR041392 -
Vra5g0311 721 SUPERFAMILY Galactose-binding domain-like 398 567 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0311 Vra-Chr5 2965323 2971358 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0311 10 720 Glycoside Hydrolase AT3G13750 72.867 0.0 1090
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0311 - - gmx:100792629 1436.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0311 5 2965323 2971358 Vra5g0311 5 2965323 2971358 ECH
Vra7g2561 7 45926127 45931622 Vra5g0311 5 2965323 2971358 PCT