Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2545 ATGATAACCATTAAGGATATTTATGATGTTTTCGCTGCTATTGTGCCCCTGTACGTGGCCATGATATTAGCTTATGGTTCGGTTCGGTGGTGGAAAATTTTCACACCTGATCAATGTTCTGGTATAAACCGCTTTGTTGCGGTCTTTGCAGTTCCACTGCTTAGTTTCCACTTCATCTCCTCTAATGACCCTTATGCTATGAACTACCACTTCATAGCAGCTGATTCTCTTCAGAAAGTTGTCATTCTTGGTGCTCTCTTTCTATGGAACACCTTCACAAAACATGGCAGCCTAGACTGGACCATCACCCTGTTCTCTCTTTCCACTCTTCCAAACACCCTTGTCATGGGGATCCCTCTATTGAAGGCCATGTATGGGGACTTTTCAGGGAGCCTCATGGTTCAAATTGTGGTGCTGCAAAGTGTCATATGGTACACTCTCATGTTGTTCTTGTTTGAATATAGAGGTGCCAAACTCCTCATCACAGAACAGTTCCCTGAGACTGCAGGCTCCATCACCTCCTTCAGGGTTGACTCAGATGTTGTCTCACTCAACGGTAGGGAGCCGCTGCAAACTGATGCTGAGATAGGAGAAGATGGAAAGCTCCATGTGGTGGTTAAGAGATCAGCAGCTTCTTCTATGATATCTTCCTTCAACAAATCCCATTTAACTTCTATGACTCCTAGAGCATCTAATCTCACTGGGGTAGAGATCTATTCCGTTCAGTCATCAAGAGAACCAACCCCAAGAGCTTCCAGTTTCAATCAAACAGACTTTTATGCCATGTTTGCAAGCAAGGCACCGAGTCCAAAGCATGGCTACACAAACAGTTTCCAGAGTAATAGTGGTATTGGTGATGTTTACTCGTTGCAATCTTCCAAGGGGGCAACGCCAAGGACTTCTAATTTTGAAGAGGAGATGTTGAAGATGCACAAAAAGAGAGGAGGGAGAAGCATGAGTGGAGAGTTGTTTAATGGAGGTTTGGTTTCTTCTTACCCACCTCCGAATCCAATGTTTTCAGGGTCCACAAGCGCTGGTGGCCTCAAAAAGAAAGATAGCACTGGTAGCAGTGCTGCACCTAATAAAGAGTTACACATGTTTGTTTGGAGTTCAAGCGCATCACCAGTTTCTGAGGGGAATTTGAGGCATGCAGTTAATAGAGCTGCCTCTACCGACTTTGGAACAGTTGATCCTTCCAAGGCTGTTCCACACGAAACTATTGCTTCCAAAGCTGTTCAAGAATTGATTGAGAACATGAGTCCTGGTCGTAGAGGGAGTGGAGAGAAGGAGCTTGAAATGGATGAGGGAGCGAAATATCCCACAAGTGGATCTCCATACACCTGCCAGAAGAAGGTGGACATAGAAGGCAATGCAAACAAAAACCAACAGATGCCACCGGCTAGTGTCATGACAAGACTCATCCTCATCATGGTTTGGAGAAAACTCATAAGAAATCCCAATACCTACTCCAGTCTTTTGGGACTCACATGGTCTCTCATATCATTTAGGTGGCACATTGAAATGCCAACTATTGTAAAAGGTTCCATCTCAATACTGTCCGATGCTGGTCTAGGAATGGCCATGTTCAGTCTAGGTCTGTTCATGGCATTACAACCCAAGATCATTGCCTGTGGAAAATCTGTTGCAGCATTTTCTATGGCTGTTAGGTTCTTGACAGGTCCAGCTGTTATTGCTGCAACCTCCATAGGCATTGGACTCCGTGGAGTTCTTTTGCATGTTGCAATTGTCCAGGCTGCTCTTCCTCAAGGTATCGTTCCCTTTGTGTTTGCCAAAGAATACAATCTCCATGCAGATATTCTTAGTACTGCGGTTATATTTGGAATGCTGATTGCATTGCCCATAACCATACTCTACTACGTGCTGCTTGGAGTCTAA 1896 0.4462 MITIKDIYDVFAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFISSNDPYAMNYHFIAADSLQKVVILGALFLWNTFTKHGSLDWTITLFSLSTLPNTLVMGIPLLKAMYGDFSGSLMVQIVVLQSVIWYTLMLFLFEYRGAKLLITEQFPETAGSITSFRVDSDVVSLNGREPLQTDAEIGEDGKLHVVVKRSAASSMISSFNKSHLTSMTPRASNLTGVEIYSVQSSREPTPRASSFNQTDFYAMFASKAPSPKHGYTNSFQSNSGIGDVYSLQSSKGATPRTSNFEEEMLKMHKKRGGRSMSGELFNGGLVSSYPPPNPMFSGSTSAGGLKKKDSTGSSAAPNKELHMFVWSSSASPVSEGNLRHAVNRAASTDFGTVDPSKAVPHETIASKAVQELIENMSPGRRGSGEKELEMDEGAKYPTSGSPYTCQKKVDIEGNANKNQQMPPASVMTRLILIMVWRKLIRNPNTYSSLLGLTWSLISFRWHIEMPTIVKGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVAAFSMAVRFLTGPAVIAATSIGIGLRGVLLHVAIVQAALPQGIVPFVFAKEYNLHADILSTAVIFGMLIALPITILYYVLLGV* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2545 631 PANTHER AUXIN EFFLUX CARRIER COMPONENT 2 1 631 IPR033526 GO:0010315|GO:0010329
Vra7g2545 631 Pfam Membrane transport protein 10 626 IPR004776 GO:0016021|GO:0055085
Vra7g2545 631 TIGRFAM 2a69: auxin efflux carrier 1 630 IPR014024 -
Vra7g2545 631 MobiDBLite consensus disorder prediction 336 359 - -
Vra7g2545 631 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2545 Vra-Chr7 45779566 45782970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2545 102 631 Organic Solute Cotransporters AT5G57090 74.457 0.0 783
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2545 K13947 - gmx:100305383 1153.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2545 7 45779566 45782970 Vra7g2545 7 45779566 45782970 ECH
Vra7g2545 7 45779566 45782970 Vra5g0322 5 3100827 3102430 PCT