Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0322 ATGATCAAAGGTAGCGACGTGTATGATGTAGTGGCAGCCATTGTGCCTCTCTATGTGGCTTTGATCTTAGCATATGGCTCTGTCCGTTGGTGGAAGATCTTCACCCCAGAACAGTGCTCTGGCATAAACCGTTTTGTGTCTGTTTTTGCGGTGCCCTTCCTCTGTTTTCGTTTCATATCCACCAATGACCCTTACACCATGAACTTCAGGTTCTTAGCCGCGGACTCTCTTCAAAAGGTTGTGATTTTGGTTGCACTTGTTCTGTGGAACGCTTTCACAAAATGGGGTAGCCTTGACTGGACAATCACACTGTTCTCACTCTCCACTCTCCCCAACACGCTCATCATGGGGGTTCCTATTCTCAAAGCCATGTACGGAGACTTCACAGGCACCCTCATGATCCAAATTGTGGTTTTTCAGAGTGTGATTTGGTACACTCTCTTGCTGTTCATGTTTGAATATAGAGCGGCTAAGCTACTCATTATGGAGAATTTCCCTGATACAGCAGCTTCTATATCCTCCTTTCGAGTTGATTCACATGTTGGTTCTCTGGGTGGTCGAGAGATGCTGGAGACTAATGCAGAAACCGGAGAACATGGGAATGTTCACGTGGTGGTGAGGAGCATGTCACGTTCTGTGTCCTTTGCATCAAACCTCACTGGGATTGAGATCTATTCAGAGGAGTCGTCTAGAGAACCAAAGCTGGGAAGATCAAATTTTAGTGCCACAGATTTGCACCCACATGGTCTGAAAAGAGAGAGGATGTCAAAAATTCATGACAAGAGTTTCTCGAGGAGCAAGAGCGTTGGTCATAATTTGGTTTCTCCGTATCCGTTTCTGAAACCAACAGGGGACAAGGAGACAGACAGTAACAAGGGTTTGCACATGTTTATGTCAACTTCACCAACTTCTGATCCTAATGTGAGACATGCTGCGAATAATAGAGTTGGATCTTACGAGTTTGAGACCATGGAATCTTCAAACGGTGTTGATTTTGCAAGGGAAACTGGTCCATCCAAAGGTAATTTTATCTCACCATAA 1041 0.4496 MIKGSDVYDVVAAIVPLYVALILAYGSVRWWKIFTPEQCSGINRFVSVFAVPFLCFRFISTNDPYTMNFRFLAADSLQKVVILVALVLWNAFTKWGSLDWTITLFSLSTLPNTLIMGVPILKAMYGDFTGTLMIQIVVFQSVIWYTLLLFMFEYRAAKLLIMENFPDTAASISSFRVDSHVGSLGGREMLETNAETGEHGNVHVVVRSMSRSVSFASNLTGIEIYSEESSREPKLGRSNFSATDLHPHGLKRERMSKIHDKSFSRSKSVGHNLVSPYPFLKPTGDKETDSNKGLHMFMSTSPTSDPNVRHAANNRVGSYEFETMESSNGVDFARETGPSKGNFISP* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0322 346 Pfam Membrane transport protein 10 229 IPR004776 GO:0016021|GO:0055085
Vra5g0322 346 PANTHER AUXIN EFFLUX CARRIER COMPONENT 2 1 327 IPR033526 GO:0010315|GO:0010329
Vra5g0322 346 MobiDBLite consensus disorder prediction 323 346 - -
Vra5g0322 346 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0322 Vra-Chr5 3100827 3102430 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0322 1 246 Organic Solute Cotransporters AT1G73590 61.923 4.02e-107 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0322 K13947 - gmx:100499638 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0322 5 3100827 3102430 Vra5g0322 5 3100827 3102430 ECH
Vra7g2545 7 45779566 45782970 Vra5g0322 5 3100827 3102430 PCT