Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2535 ATGCGCTCAGGAGTTTGTGCATTACAGCAGACCCTCACAGCTGAGGCTGCTTCAGTGTTGAAGCACTCTCTGGGGTTGGCTCGGAGGAGGGGCCATGCACAGGTCACTCCTCTGCATGTTGCTGCCACTTTGCTCAGCCTAAGAGGCAGTTCCTTGAGAAGGGCTTGTCTCAAGTCTCAGCCTCACCAAACTTCTCATCCTCTTCAATGCAGGGCTCTTGAGCTTTGCTTCAATGTGGCTCTCAACAGGCTTCCAACAGCACCTGCTCCCTTGATCCACACTCAGCCCTCTCTCTCCAATGCTCTCATTGCTGCATTGAAGAGAGCTCAGGCTCATCAGAGAAGGGGCTGCATAGAGCAACAGCAACAACAGCCTCTTCTTACCATCAAGGTTGAGCTGGAACACCTCATAACATCAATCCTTGATGACCCTAGTGTTAGCAGGGTTATGAGAGAGGCTGGTTTCTCCAGCACTGCTGTTAAGAACAACATAGAGGATTCTTCACCCCATTCTGTTTTCCAGTGTTACAATAGCTCTGGTGGTGTGTTTTCTTCTCCTTGCTCACCCTCTTCCAGTGAGAACCACAGGGAAACTTCCACCAACCCTACCAACTTCAGGCAGACTCATCGTTTCTTAACTTCTTATGCTTCTGAGTTCCATCCTTCACTTCTCTTTTCTCCGCTGAAGAGTGCACCAGCGTGTTCCTTCTCTGGTGCAGCTTCTTCTTCAAGTAAGGATGATATCAAGGTTGTTCTGGATATTCTCCTGAGGAAGAAGAAAAAGAACACTGTGATTGTAGGTGACTCTGTGTCATTAACTGAGGGTCTTGTGGGAGAGCTAATGAGAAGGGTAGAAAGGTCAGAAGTGCCTGATGAGTTAAAGTCAAGCCATTTTATCAAATTCCAGATTTCACCTGTTTCTTTGAGTTGCATGAAGAGAGATGAAGTCGAAATGAAACTCTTGGAACTAAAAAGGAAGGTGAATTCCGTTGCATCAGGAGAAGGGGGTGGCATTTTTTATATTGGAGACCTGAAGTGGACGGTGGAGGAGGCAAGTCTCAGTGACAAAGAGGAAGGATCCCCAGAAGGAGAAGTTTCTTGTTACAATCCAGTTGACCATTTGGTTTCAGAAATTGGTAGGTTATTCTGTGACTGTGGAACCTCAAATAATGCTAAGGTGTGGCTCATGGCCACTTCTAGTTACCAAACATACATGAGATGTCAAATGAGGCAACCCCCTCTTGAGAAGCAGTGGGCTCTTCAGGCTGTTCCTGTTCCATCAGGTGGACTTGACTTGAGTCTTCATGCTCCCAGTGTGCCTGAAACAAAGCCCTTTGGTAATACGGAGCAGCAGGATAGGCTGAACTGTTGTGAAGAATGTGCCTCAAATTATGAAAAAGAAGCCCAATTTCTTATGCCAGATCAAAAGAAAATGATGCCGTTCTGGCTTCAGTCTCATAGCACAGAAGACCATAATAAGGATGAATTAGTCAAGTTGAAAAGAAAGTGGAATAGACTGTGCCACTGTCTCCACCAAAGCAAACAGCTTCATAACCCATTGAACTGGAACAACAGTTATAATTCGGCAAGCTCCATATCTTTTGCGAACAATGCGACACATTGCTCCACCTCCAAACTTGTTCCTCGATTCCGGCGCCAACAATCATGCATCATTGAGTTCAATTTCGGCGACAAAAGGAAAGCAACAGAGCGAGTCTTAGATTCCCTGGAGGGCATGGAAGGTAAAGAAGTAAAGACTACTCTTGCTCTTGGCAATGGCGGTTCAGGTGAGACGGTGGGGGATATAACTGATGATAGAACACTGCAAAGAGCTCATATTTGTAAACTATTGCAGGAGAATGTGCCATGGCAGTCTGAGACTGTTCCTTCAATAGCAGAAGCCTTGATCCATTCCAAATCAGCAAAGCAAAATAACAGTATTACTTGGTTACTTGTTAAAGGCAATGACACCATTGGGAAAAGAAGGTTGGCACTTGCAGTTGCAGAATCAGTTTTTGGCTCAACTGATGTGCTCCTTCAATTTGACATGCTAAAGAAAGAGACTTCAGTAGCCCCATTTTCTGAAATGCTGGCAGGAGCGCTGAAAACCCACCACCAGCTTGCGGTGCTAATAGAAAATGTTGACTTTGCTGATGCCCAGTTCAAGAAATTCCTCTCAGATGGGTTTGAAACAGGAAAGTTTGGAAATTCCACAGAAGAGAACTCAAGCCAAGTGATACTGATTTTGACAAGTGGTGGATTCACTGGCATTGAGGAGAAGAACGAGGATTCGGTTATCAAGTTGTTATGGGAGGTTAGTGAAAGCAAGCCAAACTTAGAGACTCAATCAGTCACAAGTAGGATAATAGAGCCTTGTTTGGGCAAGAAAAGAAGAGCTGAACTTGATTTGTTTTCTGACACAAAGAGTTTTGAAGGGAGCAAGAAGAAAGTGGGTTTTAACAGTCTTGATCTGAACATGAAAGCTGATGAAGAGGGTGATGGGGAGGGTAAAGCAGCAGAAAGTAGTAGTATTTCAAGTGATTTGAGTAGGGAAAGTATAGGAGATGGAGTGGGAAAAAAGGGATTTCTTGAGTTGATTGAAAACCGGTTTGAGTTTAAGAAAAGTGAAGTTAAAGAGAGAGAGATGGCAGAGTTGTTTTTGTGGAAGATAAAAGGGTCTTTTGAGGAGGTTCGTGGGAAAAAATGTTGGGAGAATTTAAGTGTAGATGAGAGGGTGATTGAGGAAGTGTGTTTTGGGTGTGGTTATTTTAGCGAGAAGGTGTTTGAGAAATGGCTGAAAAAGGTATTCCAAAGCAGCTTAAAAACAGTTAACTTTGGAGTGAAGGAGGGTATAGTTTTTAGACTTTGTTGGGGTGGTAAAGGAGATACAAAAGCAGATAGTGGCTTCATGAGTTCTTCTCTGCCCAAGAGTATCCAACTTAATTACTTCATTCAGTGA 2958 0.4408 MRSGVCALQQTLTAEAASVLKHSLGLARRRGHAQVTPLHVAATLLSLRGSSLRRACLKSQPHQTSHPLQCRALELCFNVALNRLPTAPAPLIHTQPSLSNALIAALKRAQAHQRRGCIEQQQQQPLLTIKVELEHLITSILDDPSVSRVMREAGFSSTAVKNNIEDSSPHSVFQCYNSSGGVFSSPCSPSSSENHRETSTNPTNFRQTHRFLTSYASEFHPSLLFSPLKSAPACSFSGAASSSSKDDIKVVLDILLRKKKKNTVIVGDSVSLTEGLVGELMRRVERSEVPDELKSSHFIKFQISPVSLSCMKRDEVEMKLLELKRKVNSVASGEGGGIFYIGDLKWTVEEASLSDKEEGSPEGEVSCYNPVDHLVSEIGRLFCDCGTSNNAKVWLMATSSYQTYMRCQMRQPPLEKQWALQAVPVPSGGLDLSLHAPSVPETKPFGNTEQQDRLNCCEECASNYEKEAQFLMPDQKKMMPFWLQSHSTEDHNKDELVKLKRKWNRLCHCLHQSKQLHNPLNWNNSYNSASSISFANNATHCSTSKLVPRFRRQQSCIIEFNFGDKRKATERVLDSLEGMEGKEVKTTLALGNGGSGETVGDITDDRTLQRAHICKLLQENVPWQSETVPSIAEALIHSKSAKQNNSITWLLVKGNDTIGKRRLALAVAESVFGSTDVLLQFDMLKKETSVAPFSEMLAGALKTHHQLAVLIENVDFADAQFKKFLSDGFETGKFGNSTEENSSQVILILTSGGFTGIEEKNEDSVIKLLWEVSESKPNLETQSVTSRIIEPCLGKKRRAELDLFSDTKSFEGSKKKVGFNSLDLNMKADEEGDGEGKAAESSSISSDLSRESIGDGVGKKGFLELIENRFEFKKSEVKEREMAELFLWKIKGSFEEVRGKKCWENLSVDERVIEEVCFGCGYFSEKVFEKWLKKVFQSSLKTVNFGVKEGIVFRLCWGGKGDTKADSGFMSSSLPKSIQLNYFIQ* 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2535 985 SUPERFAMILY Double Clp-N motif 12 165 IPR036628 -
Vra7g2535 985 Gene3D - 9 168 IPR036628 -
Vra7g2535 985 ProSiteProfiles Clp repeat (R) domain profile. 8 170 IPR004176 -
Vra7g2535 985 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 960 - -
Vra7g2535 985 PANTHER PROTEIN SMAX1-LIKE 5 1 960 - -
Vra7g2535 985 Gene3D - 586 791 IPR027417 -
Vra7g2535 985 Pfam Clp amino terminal domain, pathogenicity island component 131 166 IPR004176 -
Vra7g2535 985 Pfam Clp amino terminal domain, pathogenicity island component 26 53 IPR004176 -
Vra7g2535 985 MobiDBLite consensus disorder prediction 828 852 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2535 Vra-Chr7 45658449 45662576 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2535 - - vra:106769441 1859.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2535 7 45658449 45662576 Vra7g2535 7 45658449 45662576 ECH
Vra7g2535 7 45658449 45662576 Vra5g0331 5 3226239 3230672 PCT