Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0331 ATGCGCTCAGGAGCTTGTACATTGCAACAGACCCTCACAGCGGAGGCTGCTTCAGTGTTGAAGCACTCTCTTGGGTTGGCACGCAGAAGGGGCCATGCACAGGTCACCCCTCTGCATGTGGCTGCTACTTTGCTCAGTCTAAGAGCCAGTTCCTTGAGAAGGGCTTGTCTCAAATCTCAGCCACACCAAACATCTCACCCTCTTCAGTGCAGAGCTCTTGAGCTTTGCTTCAATGTCGCCCTCAACAGGCTCCCAACAACACCTGGCCCTTTGCTCCACACACAGCCTTCTCTCTCCAATGCTCTCATTGCTGCACTCAAGAGAGCTCAGGCTCACCAGAGAAGAGGCTGCATTGAGCAGCAGCAGCAGCAGCCACTTCTCACCATCAAGGTCGAGCTTGAACAGCTCATTATATCTATCCTTGATGACCCTAGTGTTAGCAGGGTTATGAGAGAGGCTGGTTTCTCTAGCACTGCTGTTAAGAGCAACATAGAGGATACTTCTTCCACACCTTCTGTTTTCCAGTGTTACAACACTTCTGGCGGTGTTTTCTCTTCTCCTTGCTCTCCTTCTCCCAGTGAGAACACCACAGCCACTGCCTTCAGGCAGAACCATTTCTTGTCTGCCTACACTTCTTCTGAGTTCAGTTCTCCATTTCTGTTCTCTCCACAGAAGAAGGCCTCCGTGTTTCCCATCACCGAGTCACCACCACCACCACCACCCTCTTCCAAGGAGGATATCAAGGTTGTTCTTGATGTCCTCTTGAGGAAGAAGAAGAGGAACACTGTGATAGTTGGTGACTCGGTGGCACTCACTGAAGGCCTTGTGGGAGAGCTGATGGGGAAGTTGGAAAGAGGAGATGTCCCTGATGAGTTGAAGTCAACACATTTCATCAAGTTTCAGCTTGCACCGGTTTCTCTGAGGTTCATGAAAAGGGAAGAAGTGGAGATGAGTCTCTCAGCACTGAAGAGGAAGGTTGATTCTGTTGCATCAGGAGGAGGAGCCATTTTCTATGTTGGAGACCTCAAGTGGACTGTAGAAGCACCAACTTCTAGTGAAAAGGATGAAGGAGAAGTCTTTGGCTATAACCCAGTTAATCATCTACTTGCTGAAATAGGGAAGTTGTTTTGTGATTCCAACACAAAGGTATGGCTTGTGGCCACAGCAAGTTATCAAACATACATGAGGTGCCAAATGAAGCAACCCCCTCTTGAGACTCAATGGGCTCTTCAAGCTATTCCTGTTCCATCAGGTGGACTTGGCTTGAGTCTCCATGCTTCCAGTGTTCACGATTCAAAGATGACAATCTCCCAGAATCCATCTCATATGCTGGAAACAAAGCTCTTCAGTAACAGCAAGGAGGAGCAGGATAAACTCAACTGCTGTGAAGAATGTGCCTCCAATTATGAAAAGGAAGCTCAGTTGTTCAAACCAGACCAGAAGAAACTGTTACCTTCATGGCTTCAGTCTCATACCACTGCAGCCCATCAAAAGGATGAGTTGCGTCAGTTGAAAAGAAAATGGAACAGACTATGCCACTGTCTGCACCAGAGCAAACAGTCTGATAACCATTGGAGCAACATTTTACACGGCAATCAGAGTTCAAATGCGAAGATCTACCCTTACAATTCATCATATCCCTGGTGGCCAAACCAGGGAAGTGTCTTCACAGATTCAAGTTCAATATCTTTCGCTGATTCACCAGCCAAACCGGCTTATAGCTCCAACATTGTCCCTCGGTTTCGGCGCCAACAATCATGCACCATTGAGTTCAATTTCAGTGATGTGACTCAGAGAAAGCCATCCACAGCCTTGGATTCTCTCAAGGGCATGGAAGGTAATAGTAACGAAGTAAAGATTACTCTTGCTCTTGGAAATTCAACATTCGGTGGTTCAGGGCAAACGGTGGAAAATATCATAACTACTGATAGAACACTGCGACGAGCTCATATTTGTAAACTGTTGCAGGAGAATGTGCCATGGCAATCTGAGACAGTTCCTTCCATAGCCGAGGCATTGGTTGATTCCAAATCTGCAAAGCAGAGTGCTACTACTTGGTTGTTGTTGCAAGGAACTGACTCTGTTGGGAAAACAAGGTTGGCACGTGCGATTGCAGAATCGGTGTTTGGCTCAGTTGATGTGCTCCTTCACTTGGACATGCTGAAAAATTCAGCGACCCCATTTGCTGAAAGGGTGGCTGGAGCCTTGAAAAGCCAGGAGAAGCTTGTGATTCTGATAGAAAATTTGGATTTTGCCGATGCCCAGTTCAGGAAGTTTCTTGCAGATGGGTTTGAAAGTGGAAACTTTGGAAGTTTAAGTAGGACTGAGGAGAGTTCAGGGCGTGCAATATTCATACTAACCAATGGTGACACAAGGGGAAATGGAGAGCAGAACAATAAGGAGTCAGTGATGAAGTTGGTGCTGAAGATAAGTGAAACGAAGGGTGGTTTGGAGTCTTCATCATCATCACCTTGTTCGGGTGAGAAGAGAAAGGGTGAAGTGCTGGATTTGTTTTCCAAGGTTAAGAATCGAAGGGTGGAGGGTAGGAAAGTGTTTAGTCGGCATTCAAGCTTCAACAATCTTGACCTGAACATGAAAGCTGATGAAGAGGGGGATGAAAATGGGGAAGAGAAAACAGGTGGAAGCAGTCCAATTTCAAGTGATTTGACAAGGGAAACTGTGGCAGATCCATTGAGCTGGAATGGGGTTCTTGAGTCGATTGAGAACAGGTTTGAGTTGAATGAAAGTGCAGAGAGTGAAAGGGAGGTGGGAGAGATGTTGGTGTCAAAGATGAAAGAGTGGTTTGAGGAGGTTTATGGAAAGAAATTTACTGTAGAGGAGAGGGTGATAGAAGAAATTGGTGTGGGGTGTGGAAATTTTACTAACAGCATGTTTGAGAAATGGCTGAAAGACATTTTTCAAAGCAGTTTACAGACAGTTAACTTTGGTGGGGTGGAGGGGGGTATAGGTTTTACACTTTGTTGGGATGGTAAAGGTGATAGCAAATGGGATAATGGATTCATGGGTTCATGTTTGCCCAAGAATCTCCAAGTTAACTACTTCATGGATTAA 3072 0.4603 MRSGACTLQQTLTAEAASVLKHSLGLARRRGHAQVTPLHVAATLLSLRASSLRRACLKSQPHQTSHPLQCRALELCFNVALNRLPTTPGPLLHTQPSLSNALIAALKRAQAHQRRGCIEQQQQQPLLTIKVELEQLIISILDDPSVSRVMREAGFSSTAVKSNIEDTSSTPSVFQCYNTSGGVFSSPCSPSPSENTTATAFRQNHFLSAYTSSEFSSPFLFSPQKKASVFPITESPPPPPPSSKEDIKVVLDVLLRKKKRNTVIVGDSVALTEGLVGELMGKLERGDVPDELKSTHFIKFQLAPVSLRFMKREEVEMSLSALKRKVDSVASGGGAIFYVGDLKWTVEAPTSSEKDEGEVFGYNPVNHLLAEIGKLFCDSNTKVWLVATASYQTYMRCQMKQPPLETQWALQAIPVPSGGLGLSLHASSVHDSKMTISQNPSHMLETKLFSNSKEEQDKLNCCEECASNYEKEAQLFKPDQKKLLPSWLQSHTTAAHQKDELRQLKRKWNRLCHCLHQSKQSDNHWSNILHGNQSSNAKIYPYNSSYPWWPNQGSVFTDSSSISFADSPAKPAYSSNIVPRFRRQQSCTIEFNFSDVTQRKPSTALDSLKGMEGNSNEVKITLALGNSTFGGSGQTVENIITTDRTLRRAHICKLLQENVPWQSETVPSIAEALVDSKSAKQSATTWLLLQGTDSVGKTRLARAIAESVFGSVDVLLHLDMLKNSATPFAERVAGALKSQEKLVILIENLDFADAQFRKFLADGFESGNFGSLSRTEESSGRAIFILTNGDTRGNGEQNNKESVMKLVLKISETKGGLESSSSSPCSGEKRKGEVLDLFSKVKNRRVEGRKVFSRHSSFNNLDLNMKADEEGDENGEEKTGGSSPISSDLTRETVADPLSWNGVLESIENRFELNESAESEREVGEMLVSKMKEWFEEVYGKKFTVEERVIEEIGVGCGNFTNSMFEKWLKDIFQSSLQTVNFGGVEGGIGFTLCWDGKGDSKWDNGFMGSCLPKNLQVNYFMD* 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0331 1023 ProSiteProfiles Clp repeat (R) domain profile. 8 170 IPR004176 -
Vra5g0331 1023 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 998 - -
Vra5g0331 1023 PANTHER PROTEIN SMAX1-LIKE 5 1 998 - -
Vra5g0331 1023 Gene3D - 9 170 IPR036628 -
Vra5g0331 1023 Gene3D - 632 819 IPR027417 -
Vra5g0331 1023 SUPERFAMILY Double Clp-N motif 12 165 IPR036628 -
Vra5g0331 1023 Gene3D - 238 417 IPR027417 -
Vra5g0331 1023 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 654 787 IPR027417 -
Vra5g0331 1023 Pfam Clp amino terminal domain, pathogenicity island component 131 166 IPR004176 -
Vra5g0331 1023 Pfam Clp amino terminal domain, pathogenicity island component 26 46 IPR004176 -
Vra5g0331 1023 MobiDBLite consensus disorder prediction 862 891 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0331 Vra-Chr5 3226239 3230672 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0331 - - gmx:102660146 1625.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0331 5 3226239 3230672 Vra5g0331 5 3226239 3230672 ECH
Vra7g2535 7 45658449 45662576 Vra5g0331 5 3226239 3230672 PCT