Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2530 ATGGCCACCCTCGACCCAATCCAAAACGGCACAGCCAATCCCCTGCTATCGGACAATCCCGACCCCGCCGAACCTCCCTCCACCACCGCCGACGATCCCACTTCCGAGGTCTCGGCCGAGAAGCGGTGGCCGGGATGGCCCGGCCTCTGCGTGTTCCGGCTCATCGTTCCGGTCCTCAAAGTCGGAAGCATCATTGGCCGCAAGGGGGAGCTCATCAAGAAGACTTGCGAGGAAACGAAAGCTCGCATTCGAGTCCTCGACGGTGCGGTTGGCACGCCCGATCGAATCGTACTCATATCAGGGAAGGAAGAGCCAGAGACACCACTTTCTCCTGCAATGGATGCTGTCATAAGGATTTTTAAACGTATCTCCGGGTTGTCTGAAATTGATGGCGAGAATAAAGCAGCAGGGCTTGCGTTTTGTTCTGTTCGTTTATTGGTGGCCTCAACGCAGGCTATCAATTTGATTGGAAAGCAGGGTTCATTAATCAAATCTATACAAGAAAATACCAGTGCATCTGTTAGAGTACTATCTGGAGATGAGGTTCCCTTTTATGCTGCTTCGGATGAGAGGATTGTTGAGCTACAGGGAGAAGCCATGAAGGTCCTTAAGGCTCTTGAAGCAGTAGTTGGGCACCTGAGGAAGTTTTTGGTTGACCCCAGTGTTCTTCCCTTATTTGAGAAAAGTTACAATGCAACAATCTCCCAAGAGCGGCAAGTAGATACTACTTGGGCTGACAAACCATCACTGCATAGTGCTTCACAGCCTAGCATTGCAAATGACATTCCTCTTTCATCAAAAAGGGATTCTCTGTTTGCTGACCGTGAAAGCCATTTGGATTCATTGCTCCCTCCTTCCACAATGTCAGTATATGGTCAAGATTCTTCACTTTCTAGTCTTCGCTCTTCAGCACTCGGTCGTTCCAGTGCTCCTCCTATTGTTACCACGGTAATACAAACAATGCAAATACCACTGTCCTACGCAGAGGACATAATTGGTATACAAGGGACTAATATTGATTACATTCGCCGCACCAGTGGAGCTATATTGACCGTGCAGGAGAGCCGGGTGCCTGATGAAATCATTGTGGAAATAAAAGGCACCTCATCTCAGGTTCAGACAGCACAACAATTGATTCAGGAAGTTATAAGTAATCACAAAGAACCTGTGGCTAGTAATTACAGCAGCAGGTTAGATTCAGGTCTGAGGTCTTCTTACGCTCAGCTGGGCAGTTCGTCTTATTCGTCATCTTCCTTGTCGCAACCCTACAGCGGTTATGGATCTTCTGGTCTAGGAGGAGGCTATAGTACTTTCAGACTTTGA 1323 0.4837 MATLDPIQNGTANPLLSDNPDPAEPPSTTADDPTSEVSAEKRWPGWPGLCVFRLIVPVLKVGSIIGRKGELIKKTCEETKARIRVLDGAVGTPDRIVLISGKEEPETPLSPAMDAVIRIFKRISGLSEIDGENKAAGLAFCSVRLLVASTQAINLIGKQGSLIKSIQENTSASVRVLSGDEVPFYAASDERIVELQGEAMKVLKALEAVVGHLRKFLVDPSVLPLFEKSYNATISQERQVDTTWADKPSLHSASQPSIANDIPLSSKRDSLFADRESHLDSLLPPSTMSVYGQDSSLSSLRSSALGRSSAPPIVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAILTVQESRVPDEIIVEIKGTSSQVQTAQQLIQEVISNHKEPVASNYSSRLDSGLRSSYAQLGSSSYSSSSLSQPYSGYGSSGLGGGYSTFRL* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2530 440 Gene3D - 50 216 - -
Vra7g2530 440 ProSiteProfiles Type-1 KH domain profile. 140 209 - -
Vra7g2530 440 CDD PCBP_like_KH 51 120 - -
Vra7g2530 440 Gene3D K Homology domain, type 1 314 389 IPR036612 GO:0003723
Vra7g2530 440 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 311 385 IPR036612 GO:0003723
Vra7g2530 440 Pfam KH domain 143 209 IPR004088 GO:0003723
Vra7g2530 440 Pfam KH domain 52 104 IPR004088 GO:0003723
Vra7g2530 440 Pfam KH domain 319 381 IPR004088 GO:0003723
Vra7g2530 440 CDD PCBP_like_KH 142 210 - -
Vra7g2530 440 MobiDBLite consensus disorder prediction 1 41 - -
Vra7g2530 440 ProSiteProfiles Type-1 KH domain profile. 49 116 - -
Vra7g2530 440 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 43 104 IPR036612 GO:0003723
Vra7g2530 440 SMART kh_6 139 214 IPR004087 GO:0003676
Vra7g2530 440 SMART kh_6 315 384 IPR004087 GO:0003676
Vra7g2530 440 SMART kh_6 48 121 IPR004087 GO:0003676
Vra7g2530 440 CDD KH-I 318 380 - -
Vra7g2530 440 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER 37 425 - -
Vra7g2530 440 ProSiteProfiles Type-1 KH domain profile. 316 379 - -
Vra7g2530 440 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 37 425 - -
Vra7g2530 440 MobiDBLite consensus disorder prediction 1 34 - -
Vra7g2530 440 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 138 219 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2530 Vra-Chr7 45606521 45612482 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2530 K21444 - gmx:100802089 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2530 7 45606521 45612482 Vra7g2530 7 45606521 45612482 ECH
Vra7g2530 7 45606521 45612482 Vra5g0336 5 3313017 3320381 PCT