Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0336 ATGGCCACCGCACAACCACTCCAGAACGGTTCCGCCGGCAACCTACTATCACCGGACAATGTCTCCGCCGCACAGCCACCGGCCGAGGGGGAGGCTGACACCACTGCGGCGGCACCTCCTCCGGAGAGGAGGTGGCTAGGGTGGCCCGGGGATTGCGTATTCCGTCTCATCGTGCCAGTGGGGAAGGTTGGGAGCATCATAGGGCGCAAGGGAGAACTGATAAAGAAGATGTGTGAAGAGACACGATCTCGCATTCGCGTTCTTGACGCTCCCCTCGGCACTCCTGATCGAATTGTACTTGTATCCGGGAGGGAAGAGACAGAGGCAGCCCTTTCCCCTGCAATGGATGCGGTGATAAGGATATTCAAGCGTGTCTTTGGATTATCTGAAATTGATGCTGAGAACAAAGAATCTGCTGTTGGTCTTGCATTTTGTTCCATCCGTTTATTGGTTGCATCGACACAGGCTATTAGTTTGATTGGAAAGCAAGGCTCGTTAATAAAATCTATCCAGGAGAATACCAGTGCTTCTGTTAGAGTGCTGTCAGGAGATGAGCTGCAATTTTATGCTACTGCGGATGAGAGGATTGTGGAAATTCAGGGAGAAACCTTGAAGGTCCTTAAAGCTCTGGAAGCAGTAGTTGGCCATCTGAGGAAATTTTTGGTTGATCACAGCGTTCTTCCCCTATTTGAGAGAAATTTCAATGCACCAATCTCGCAAGACCGTCAAGCAGAGACCTGGTCTGACAAGTCATTGTTGAATAGTACTTCACGTACCAGTGTATTTCCCGATATGCCTCTTCCAACAAAAAGGGATTCTATCTTGGCTGAGCGTGAAAGTCAATTGGACTCATTTCTCCCTTCTTCCACCATGTCTCTCTATGGGCAGGAGTCTTCACTTTCTGGTGTTCGTTCTTCTGCCCTAGGCCGTGTTAGTGCTCCTATTGTTACTACGGTAATACAAACAATGCAAATACCACTATCCTATGCGGAAGACATCATTGGTATTCAAGGGACTAATATTGATTACATTCGTCGCACCAGTGGTGCTGTATTGACTGTGCAAGAGAGCAGGGTGCCTGATGAAATCATTGTAGAAATCAAAGGCACCTCATCTGAGGTTCAAACAGCGCAACAGTTAATTCAGGATTTTATAAGCACTCACAAAGAACCTGTCAGTATGAATTACGGCAGGTTAGATGCAGGTTCGAGGTCTTCGTACTCTCAATTGGGCACTGCATCACGCCTCCCATCTTCGTTGTCATCACAACCATACACAGGTTATGGATCTTCTGGTTTAGGAGACTACAGTACTTTCAGGCTTTAA 1326 0.4774 MATAQPLQNGSAGNLLSPDNVSAAQPPAEGEADTTAAAPPPERRWLGWPGDCVFRLIVPVGKVGSIIGRKGELIKKMCEETRSRIRVLDAPLGTPDRIVLVSGREETEAALSPAMDAVIRIFKRVFGLSEIDAENKESAVGLAFCSIRLLVASTQAISLIGKQGSLIKSIQENTSASVRVLSGDELQFYATADERIVEIQGETLKVLKALEAVVGHLRKFLVDHSVLPLFERNFNAPISQDRQAETWSDKSLLNSTSRTSVFPDMPLPTKRDSILAERESQLDSFLPSSTMSLYGQESSLSGVRSSALGRVSAPIVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAVLTVQESRVPDEIIVEIKGTSSEVQTAQQLIQDFISTHKEPVSMNYGRLDAGSRSSYSQLGTASRLPSSLSSQPYTGYGSSGLGDYSTFRL* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0336 441 Gene3D - 51 221 - -
Vra5g0336 441 CDD KH-I 320 382 - -
Vra5g0336 441 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 314 387 IPR036612 GO:0003723
Vra5g0336 441 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 41 123 IPR036612 GO:0003723
Vra5g0336 441 Pfam KH domain 321 383 IPR004088 GO:0003723
Vra5g0336 441 Pfam KH domain 54 111 IPR004088 GO:0003723
Vra5g0336 441 Pfam KH domain 147 213 IPR004088 GO:0003723
Vra5g0336 441 MobiDBLite consensus disorder prediction 1 43 - -
Vra5g0336 441 CDD PCBP_like_KH 146 214 - -
Vra5g0336 441 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER 41 429 - -
Vra5g0336 441 ProSiteProfiles Type-1 KH domain profile. 318 381 - -
Vra5g0336 441 ProSiteProfiles Type-1 KH domain profile. 144 213 - -
Vra5g0336 441 SMART kh_6 317 386 IPR004087 GO:0003676
Vra5g0336 441 SMART kh_6 143 218 IPR004087 GO:0003676
Vra5g0336 441 SMART kh_6 50 123 IPR004087 GO:0003676
Vra5g0336 441 CDD PCBP_like_KH 53 122 - -
Vra5g0336 441 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 41 429 - -
Vra5g0336 441 MobiDBLite consensus disorder prediction 1 21 - -
Vra5g0336 441 Gene3D K Homology domain, type 1 316 390 IPR036612 GO:0003723
Vra5g0336 441 ProSiteProfiles Type-1 KH domain profile. 51 118 - -
Vra5g0336 441 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 143 225 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0336 Vra-Chr5 3313017 3320381 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0336 K21444 - gmx:100815466 731.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0336 5 3313017 3320381 Vra5g0336 5 3313017 3320381 ECH
Vra7g2530 7 45606521 45612482 Vra5g0336 5 3313017 3320381 PCT