Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2313 ATGGGTTGTCAGATAAGGCTTCTGGGTCTGTGTCTATGGATGTACTTGGCAAGCTTAAGCTTGATTTCAGTGGGCGCTATGTGTGCAAGAGTAGGTGAAGTTGAGAAAGGGATTATTTTAGTTCATGGGAAATGTGCTATTGGAAGCATTGATGATGATTTTGTGTGTGCAACTCTAGATTGGTGGCCTCCTCAGAAATGTGACTATGGAAAATGTAGTTGGGGGCATGCTTCTCTGCTTAATCTGGACCTCAACAACAAAATTTTGTTAAATGCAGTAAAAGCCTTTTCATCCTTGAAAATTAGAATAGGTGGCACTTTGCAAGACAAGGTCATATACGGAACTGAAGATAATCGAGAACCCTGTACTCCTTTTGTTTTGAATGCTAATGAAATGTTTGGTTTCACTCGAGGGTGCTTACCGATGAACAGGTGGGATGAGCTAAACCGCTTTTTCCAGAAAGCAGGGGCCAAGGTTATCTTTGGACTAAATGAGCTCGCTGGAAAATCTATAAAGTCTGGTTTTGCTGTTGGACCTTGGAACTACACCAATGCTGAATCTTTAATACGATACACTGTCAGAAAGAAGTACCACATTCATGGTTGGGAACTTGGGAATGAATTGTGTGGACATGGAATTGGGGTAAGTGTTGCAGCAGATCAATATGCTTCTGATGTAGCTGCTCTAAGAAATATAGTTCAGAATGAATATAGAGGGATTGAACCAAAGCCACTAGTTATTGCTCCTGGAGGCTTCTTTGACGCAGATTGGTTTAAGGAATTTATAAGCAAGTCTGGTAAATCTGCAGATGTGGTCACCCACCACATTTATAATCTTGGGCCAGGAGTTGATGACCACTTAATTGAAAGCATTCTTAACCCTTCCCATCTGGATGGAGAGGCTGACACATTCAGAAGTCTCAAAGGTATACTTCAAAATTCAACAAACAAGGTAAAATCATGGGTTGGTGAGGCAGGAGGGGCCTATAATAGTGGCCATCATCTTGTGTCTGATGCATTTGTCTTCAGTTTCTGGTATTTAGACCAGCTTGGCATGTCAGCTGTTTATGACACCAGAACATACTGCAGACAAAGTTTGATAGGAGGAAACTATGGTTTACTGAATACTAGTACTTTCATGCCAAATCCAGACTATTATAGTGCACTTCTTTGGCACCGACTCATGGGAAGGCGTGTCCTTTTAACCACCTTCTATGGTACAAAGAAGATAAGAACTTATGCACACTGTGCAAAGGAATCCAAAGGGGTGACAATACTAGTGCTCAACTTGGACAACAGCACCACAGTTGAAGTGAACGTGGACTTAAAATTTAACAAGTTACCTCACAGTGGAGTGCATGAACCAGCCAGAAGAGAGTACCATTTAACAGCACCAGAGAGGAATTTACATAGCCAAATCATGTTGCTAAATGGAAAAATTTTACGTGTAAACTCAGCTGGTGAAATTCCTCCTTTGGAGCCTATATATGTAGACTCAACAAAGCCAATAACAGTTGGCCCTCTATCTATTGTATTTGCTCATATACCAAACGTTATTCTTGCAGCATGCAGCTAG 1575 0.4121 MGCQIRLLGLCLWMYLASLSLISVGAMCARVGEVEKGIILVHGKCAIGSIDDDFVCATLDWWPPQKCDYGKCSWGHASLLNLDLNNKILLNAVKAFSSLKIRIGGTLQDKVIYGTEDNREPCTPFVLNANEMFGFTRGCLPMNRWDELNRFFQKAGAKVIFGLNELAGKSIKSGFAVGPWNYTNAESLIRYTVRKKYHIHGWELGNELCGHGIGVSVAADQYASDVAALRNIVQNEYRGIEPKPLVIAPGGFFDADWFKEFISKSGKSADVVTHHIYNLGPGVDDHLIESILNPSHLDGEADTFRSLKGILQNSTNKVKSWVGEAGGAYNSGHHLVSDAFVFSFWYLDQLGMSAVYDTRTYCRQSLIGGNYGLLNTSTFMPNPDYYSALLWHRLMGRRVLLTTFYGTKKIRTYAHCAKESKGVTILVLNLDNSTTVEVNVDLKFNKLPHSGVHEPARREYHLTAPERNLHSQIMLLNGKILRVNSAGEIPPLEPIYVDSTKPITVGPLSIVFAHIPNVILAACS* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2313 524 Gene3D Glycosidases 72 393 - -
Vra7g2313 524 Pfam Glycosyl hydrolase family 79, N-terminal domain 38 351 IPR005199 GO:0016020|GO:0016798
Vra7g2313 524 PANTHER HEPARANASE-LIKE PROTEIN 3 3 523 - -
Vra7g2313 524 SUPERFAMILY (Trans)glycosidases 50 395 IPR017853 -
Vra7g2313 524 PANTHER HEPARANASE-RELATED 3 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2313 Vra-Chr7 43240471 43243838 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2313 34 524 Glycoside Hydrolase AT5G61250 46.512 2.91e-168 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2313 K07964 - gmx:100778008 955.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2313 7 43240471 43243838 Vra7g2313 7 43240471 43243838 ECH
Vra7g2313 7 43240471 43243838 Vra5g0430 5 4502613 4506775 PCT