Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0430 ATGGGTTCTCGGATTCAGCTTCTGGGTCTCTGCATATGGTTTCACTTTGCATGCTCAAGCTTCATTTTTGGTTCCAGAGTGGCAGTAGGAGGAGATGCAACTGTGAAAGGGACTGTTGCCATTGATGACAAAGCTGTGATTGGAACTATTGATGATGATTTTGTTTGTGCAACTTTGGATTGGTGGCCTCCTGATAAATGTGACTATGGGAGATGCAGTTGGGGTCTTGCTTCTCTTCTCAATCTGGACCTCAACAACAAGATTTTTCTTAATGCAGTGAAAGCCTTTTCACCTTTGAAACTCAGATTAGGTGGAAGTTTGCAAGATAAGTTAATATATGGCACTGAAGATTACCACCAACCTTGTACTCCTTTTGTTAAAGACGCTTCTGAGATGTTTGGTTTCACGAAAGGGTGCCTTCCATTGAAAAGATGGGATGAACTCAACTACTTTTTTAAAAAAGCTGGGGCTAAGATCATTTTTGGATTAAATGCTCTTGCTGGAAAAACAATTCACGGTAATTCTGCAACGGGACCTTGGAATTCCACCAATGCCGAGTCCTTTATCAGATACAATGTTAGAAATGGCTACACCATTCATGGATGGGAACTTGGCAATGAATTGAGTGGGAGTGGAGTTGGAACAAGCATTACAGCAGACCAATATGCTTCTGATTTTGCTGCTTTACGAGACATAGTCTACAATGCATATGCAGATATTGATTCTAAGCCACTAGTCATTGCACCTGGAGGGTTCTTTGATGCAACCTGGTTCAGGGAATTTATAAGCAAATCTGCAAAAGCTTTGGATGTTGTCACCCACCACATTTATAACCTTGGAGCAGGAGTTGATGAACACCTTGTGGAAAGAATTCTGGACCCTTCCTTTCTTGATAAGGAGGCTAGCACATTCAGTGGCCTCAAAAATATACTTGCAAGTACAGGTACCTCAGCTACAGCATGGGTTGGTGAGTCAGGAGGGGCCTACAATAGCGGTCATCATCTTGTATCAGATGCTTTTGTTTATAGTTTCTGGTATTTGGATCAGCTTGGCATGTCAGCTGCTTATGACACTAAAACATATTGCAGACAGAGTTTGATAGGAGGAAACTATGGTTTACTCAATACTACCAATTTCCTCCCAAATCCAGACTACTATAGTGCTCTTCTTTGGCATAGACTCATGGGAAGACGTGTACTGTCAACTACCTTCTCTGGGACAAAAAAGATAAGAGCTTATGCACACTGTGCAAAGCAATCCAAGGGAATCACAGTCCTGTTGATCAACCTAGATGGCAACACAAGTGTTGAAGCTGATGTAACCTTCGATAACAATGCAAAGAGTTTGAGGCTGAGAAAGATGTCTAGTCATTCAAACATGATGGAACTGCCTCTTGCAAGTGAAGCTGCAAGAGAAGAGTACCATCTAACTCCACAGGATGGGAATATACATAGCCAAATCATGGTACTAAATGGGAAACCTCTTAGGGTAAACTCAGCTGGTGAAATTCCTCCTTTGGATCCTATATATGTGAACTCATCAGAACCAATAAGTGTTGCTCCTTTCTCTATTGTATTTGCCCATTTTCCTGATGCTGTTGTTACTGCTTGCGGCTAG 1617 0.4181 MGSRIQLLGLCIWFHFACSSFIFGSRVAVGGDATVKGTVAIDDKAVIGTIDDDFVCATLDWWPPDKCDYGRCSWGLASLLNLDLNNKIFLNAVKAFSPLKLRLGGSLQDKLIYGTEDYHQPCTPFVKDASEMFGFTKGCLPLKRWDELNYFFKKAGAKIIFGLNALAGKTIHGNSATGPWNSTNAESFIRYNVRNGYTIHGWELGNELSGSGVGTSITADQYASDFAALRDIVYNAYADIDSKPLVIAPGGFFDATWFREFISKSAKALDVVTHHIYNLGAGVDEHLVERILDPSFLDKEASTFSGLKNILASTGTSATAWVGESGGAYNSGHHLVSDAFVYSFWYLDQLGMSAAYDTKTYCRQSLIGGNYGLLNTTNFLPNPDYYSALLWHRLMGRRVLSTTFSGTKKIRAYAHCAKQSKGITVLLINLDGNTSVEADVTFDNNAKSLRLRKMSSHSNMMELPLASEAAREEYHLTPQDGNIHSQIMVLNGKPLRVNSAGEIPPLDPIYVNSSEPISVAPFSIVFAHFPDAVVTACG* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0430 538 Pfam Glycosyl hydrolase family 79, N-terminal domain 37 351 IPR005199 GO:0016020|GO:0016798
Vra5g0430 538 PANTHER HEPARANASE-RELATED 5 537 - -
Vra5g0430 538 Gene3D Glycosidases 73 393 - -
Vra5g0430 538 SUPERFAMILY (Trans)glycosidases 50 395 IPR017853 -
Vra5g0430 538 PANTHER HEPARANASE-LIKE PROTEIN 3 5 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0430 Vra-Chr5 4502613 4506775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0430 36 537 Glycoside Hydrolase AT5G07830 47.582 8.35e-177 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0430 K07964 - gmx:100802477 963.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2313 7 43240471 43243838 Vra5g0430 5 4502613 4506775 PCT