Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2232 ATGTCCATAAACGTTCACTCCCATGCCTTCGCCGGCAACCCTCTTCTCTCCAAATTCTCGTGTTCAGGCCACCCCCTTCCACCCTCTTCAGCTCTTGAAGCCCTCAACGCGAAAATTGGGCTACCGAATACTCATTCGTATCCCTCACTGAGCTTCAAGGTACTACCTTTCAGAAATGGGAGGCCCTTGGCTTCGTCCGAGGCCAGCTCCGGCGACTCGCCACCGATTTGGCATCTGGGTTGGCTCGGCCTGGACGATCTCAGGGTTATTTTCGACAAGTCCGGTGCCCAGTTGAGTGTGGACTCGTTGGTGTATCTGAATTCGAGTGCAGAGGACGACGCCGTTTACTGGGCAATCGATGTTTCTGCTGAGGTAATTGAATTGGGTAGCAAAACGGGTTTGAGTTTTGTGGAGCTTCGAACGCTCATGGTGGCTACCGACTGGTCGGATTTGCAAGCAATGGGAAGCTTGGCTATTGCTGGTCATGCTAAAGCGCTGCTAGAATGGCATAATGTATCACGATTTTGTGGACATTGTGGTGAGAAAACAGTCCCAATGGAAGCTGGACGAAGGAAGCAATGTTCTAATGGTTCATGCAAAAAGAGGATATACCCGCGTGTTGATCCGGTGGTCATTATGCTTGTAATTGATAGAGAGAATGACCGTGCTCTTTTGGCTAAGCGACCAATGCGTCTACATCGATTGTATACTTGCTTATCAGGTTTCACAGAGCCAGGGGAAAGCTTGGAGGAAGCTGTGAGAAGAGAAACATGGGAAGAGACTCGTGTTGAAGTGGGAGAAGTTGTATATCACAGTTCTCAACCGTGGCCTGTTGGACCAAGTGCCATTCCATGCCAGTTGATGGTTGGGTTCTTTGCATATGCAAAATCGCTTGAAATAACTGTGGACAAGAAAGAGTTAGAAGATGCTCAGTGGTACAGTAGAGAAGAAGTAAGAAAAGCATTGACGTCTGCTAAATACAAGGAAACCCAAAGAACTGCAGCAGAAAAGGTCGAGCAAATATGTAAGGGACTAGAAGAGAACAGAAGCTTCGCTTCAGATTTCAACGTGGAAAGTACTGGTGAAAATGCGCCAATAGTTTTCCCTGGACCCTTTGCTATAGCCCATCACCTTATTTCTTCTTGGGCATTCTCGGATTAA 1161 0.4772 MSINVHSHAFAGNPLLSKFSCSGHPLPPSSALEALNAKIGLPNTHSYPSLSFKVLPFRNGRPLASSEASSGDSPPIWHLGWLGLDDLRVIFDKSGAQLSVDSLVYLNSSAEDDAVYWAIDVSAEVIELGSKTGLSFVELRTLMVATDWSDLQAMGSLAIAGHAKALLEWHNVSRFCGHCGEKTVPMEAGRRKQCSNGSCKKRIYPRVDPVVIMLVIDRENDRALLAKRPMRLHRLYTCLSGFTEPGESLEEAVRRETWEETRVEVGEVVYHSSQPWPVGPSAIPCQLMVGFFAYAKSLEITVDKKELEDAQWYSREEVRKALTSAKYKETQRTAAEKVEQICKGLEENRSFASDFNVESTGENAPIVFPGPFAIAHHLISSWAFSD* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2232 386 Pfam NADH pyrophosphatase zinc ribbon domain 173 204 IPR015376 GO:0016787|GO:0046872
Vra7g2232 386 ProSitePatterns Nudix box signature. 241 262 IPR020084 GO:0016787
Vra7g2232 386 Pfam NADH pyrophosphatase-like rudimentary NUDIX domain 54 169 IPR015375 GO:0016787
Vra7g2232 386 ProSiteProfiles Nudix hydrolase domain profile. 205 335 IPR000086 -
Vra7g2232 386 PANTHER NUDIX HYDROLASE, NUDC SUBFAMILY 1 386 - -
Vra7g2232 386 Pfam NUDIX domain 210 328 IPR000086 -
Vra7g2232 386 PANTHER NUDIX FAMILY HYDROLASE 1 386 - -
Vra7g2232 386 SUPERFAMILY Nudix 157 330 IPR015797 -
Vra7g2232 386 Gene3D - 82 205 - -
Vra7g2232 386 CDD NADH_pyrophosphatase 209 383 - -
Vra7g2232 386 Coils Coil 328 348 - -
Vra7g2232 386 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 206 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2232 Vra-Chr7 42329008 42335268 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2232 K03426 - gmx:100793335 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2232 7 42329008 42335268 Vra7g2232 7 42329008 42335268 ECH
Vra7g2232 7 42329008 42335268 Vra3g1171 3 12397009 12405505 PCT