Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1171 ATGCAGAAGCTCCTCAATCTTCTTCCATCCTCATCTTCTAAACTACTCTCACGATACATTCTCTCACTCTCCACCAAACACCCACCACCGCTCACACGACCGTTCTCTCACCACCCTGCCACCACCACCACCATGTCCATAAACCTACGCACACACGCCTTTGCCGGCAACCCCCTCCGGTCCCGGACTCCTAACCGGGTCGAACCGTTTTCCCCCGTCGCGGCGCACGAGACCTTGAAAACGCGAATTGCGGAGAGCGCGGGCGAGTCCGTGTCCGTGAATTTTAAGGTTTTACCTTTCAGAAACGGGAGGCCCCTGGCGTCTGCGGGTAGCGGTGACACGTGGGGCCTGGCGTGGATGGCGTTGGAGGAAGTGAAGAGGCTGCTGGGCGCGAACCTGAGCGCGGACTCGTTCGTGTATTTGGGGTACGACGCGGACGAGGATTCGGTGTATTGGGCGATCGACTTGTCAAGGGAGAGTGGTTTGGTGGCTGAATTCGGTGCCATGAAGCTCTGCTTTGTCGAGCTCAGAACGCTCATGGTTGCTACCGACTGGGTCGATTTGAAGGCCATGGGGAGCTTGGCCATTGCCGGTCATGCCAGGGCACTTCTTGAATGGTATAATATATCACGATTTTGTGGACATTGTGGAGAGAAAACAGTGCCAATGGAAGCTGGGAGGCGGAAACAGTGTTCAAATGAATCATGCAAAAAGAGGATATATCCAAGAGTTGACCCGGTGGTCATTATGCTAGTAATTGATTCGGACAATGATCGTGCCCTTTTGAGCAAACAATCAAGATTTGTACCTAGAATGTGGAGCTGCTTGGCAGGTTTTATAGAGCCAGGAGAAAGCTTAGAAGAGGCTGTAAGAAGAGAAACATGGGAGGAAGTTGGTATTGAAGTGGGAGAAGTTGTATATCATAGTTCTCAGCCATGGCCTGTTGGACCAAATAGCATGCCATGTCAGCTGATGGTAGGGTTCTTTGCATATGCAAAATCCCTTGAAATAAATGTTGACAAAGAAGAGTTGGAAGATGCTCAGTGGCATACTAGAGAAGAAGTAAGAAGAGCTCTGGCATTTACTGAATACAAGAAAGCCCAACAAACTGCAGCAGCAAAGGTAGAACAAATGTGTAAGGGAGTAGAAAAGACTCACAGCTTGTCTACAGAGTTCAATGTGGAAAGCGGTGAACTTGCTCCAATGTTTGTTCCTGGACCCTTTGCAATAGCACATCACCTTATATCCTCCTGGGCATTCCCAGATAAAGATGTAAATGGCATTGAATGCCGTTCAAAACAACCTACTGGCTCTATGTCAAATTTGAAGGTGAAGGGGTGTCCTCACCAGTGA 1353 0.4952 MQKLLNLLPSSSSKLLSRYILSLSTKHPPPLTRPFSHHPATTTTMSINLRTHAFAGNPLRSRTPNRVEPFSPVAAHETLKTRIAESAGESVSVNFKVLPFRNGRPLASAGSGDTWGLAWMALEEVKRLLGANLSADSFVYLGYDADEDSVYWAIDLSRESGLVAEFGAMKLCFVELRTLMVATDWVDLKAMGSLAIAGHARALLEWYNISRFCGHCGEKTVPMEAGRRKQCSNESCKKRIYPRVDPVVIMLVIDSDNDRALLSKQSRFVPRMWSCLAGFIEPGESLEEAVRRETWEEVGIEVGEVVYHSSQPWPVGPNSMPCQLMVGFFAYAKSLEINVDKEELEDAQWHTREEVRRALAFTEYKKAQQTAAAKVEQMCKGVEKTHSLSTEFNVESGELAPMFVPGPFAIAHHLISSWAFPDKDVNGIECRSKQPTGSMSNLKVKGCPHQ* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1171 450 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 243 387 - -
Vra3g1171 450 Gene3D - 87 242 - -
Vra3g1171 450 MobiDBLite consensus disorder prediction 431 450 - -
Vra3g1171 450 PRINTS NUDIX hydrolase family signature 273 287 IPR020476 -
Vra3g1171 450 PRINTS NUDIX hydrolase family signature 287 302 IPR020476 -
Vra3g1171 450 CDD NADH_pyrophosphatase 246 419 - -
Vra3g1171 450 Pfam NUDIX domain 247 359 IPR000086 -
Vra3g1171 450 Pfam NADH pyrophosphatase zinc ribbon domain 210 241 IPR015376 GO:0016787|GO:0046872
Vra3g1171 450 PANTHER NUDIX FAMILY HYDROLASE 45 424 - -
Vra3g1171 450 PANTHER NUDIX HYDROLASE, NUDC SUBFAMILY 45 424 - -
Vra3g1171 450 ProSiteProfiles Nudix hydrolase domain profile. 242 372 IPR000086 -
Vra3g1171 450 ProSitePatterns Nudix box signature. 278 299 IPR020084 GO:0016787
Vra3g1171 450 SUPERFAMILY Nudix 194 371 IPR015797 -
Vra3g1171 450 Pfam NADH pyrophosphatase-like rudimentary NUDIX domain 97 206 IPR015375 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1171 Vra-Chr3 12397009 12405505 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1171 K03426 - gmx:100780473 688.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2232 7 42329008 42335268 Vra3g1171 3 12397009 12405505 PCT