Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2220 ATGGGTGTGGAGAATGCCTCAAAGTCCATTTCCACCTCACAATGCGATGACCAACTTAGTAACAGCAAAATCAACACACTCGTGCGTTTGAATGTCTACGATCTCACCCCTGTCAATAATTACGTCTACTGGATTGGATTTGGCATATTTCATTCTGGCATTGAAGTGCATGGTAAGGAGTATGGTTTTGGAGCCCATGATTTCCCAGCTAGTGGAGTTTTTGAAGTGGAACCAAGGAAGTGCCCTGGATTCATATATAGATGTTCCATCACTTTGGGTCAAACTAATATGAGTGCTTCTGAGTTTCGTACATTTATTGAAAACATGGCTTCTGAGTATCATGGAGATACCTATCACCTTATAACTAAGAACTGCAATCATTTTACAGAAGATCTCTCCAATAGATTGACTGGGAAACAAATCCCAGGTTGGGTGAATCGGCTTGCTAAGCTAGGTGCTTTATGCAGTTGTCTACTTCCTGAAAGTCTTCAAGTAACAAGTGTTAAACAGCTACCTGAATACCATGAATGTTCAGAAGATGAATTTGTTGAATCTCTTTCACCTGCCACACCCCGCGAGTCCACAGAAATAGATGAGGAGCAAGAAAAGCACCTTCTTTCATCATCAACTGTAACTGAGGATGTTACTTTCGTTAGAGAAAACCAAGCAAAATAA 675 0.4074 MGVENASKSISTSQCDDQLSNSKINTLVRLNVYDLTPVNNYVYWIGFGIFHSGIEVHGKEYGFGAHDFPASGVFEVEPRKCPGFIYRCSITLGQTNMSASEFRTFIENMASEYHGDTYHLITKNCNHFTEDLSNRLTGKQIPGWVNRLAKLGALCSCLLPESLQVTSVKQLPEYHECSEDEFVESLSPATPRESTEIDEEQEKHLLSSSTVTEDVTFVRENQAK* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2220 224 Gene3D PPPDE domains 21 178 IPR042266 -
Vra7g2220 224 SMART DUF862_2a 26 164 IPR008580 GO:0008233
Vra7g2220 224 ProSiteProfiles PPPDE domain profile. 26 163 IPR008580 GO:0008233
Vra7g2220 224 MobiDBLite consensus disorder prediction 182 209 - -
Vra7g2220 224 Pfam PPPDE putative peptidase domain 28 160 IPR008580 GO:0008233
Vra7g2220 224 MobiDBLite consensus disorder prediction 193 207 - -
Vra7g2220 224 PANTHER THIOL PEPTIDASE FAMILY PROTEIN, PUTATIVE-RELATED 17 224 - -
Vra7g2220 224 PANTHER DESUMOYLATING ISOPEPTIDASE 17 224 IPR008580 GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2220 Vra-Chr7 42239380 42243779 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2220 K22763 - gmx:100778961 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2220 7 42239380 42243779 Vra7g2220 7 42239380 42243779 ECH
Vra7g2220 7 42239380 42243779 Vra3g1191 3 12643858 12647056 PCT