Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1191 ATGGGGACGACCAAGACCAGCTCCAATTCTACCTCAAAATCTGATCATAATAATAATAATAATGTCAATGGCGACAAAGACAAACGCAACACCACCAGAATGGTGTTGAATGTCTACGACCTTACCCCTCTCAATAATTATTTGTATTGGTTCGGCTTTGGAATCTTTCATTCTGGCATTGAAGTACACGGTAAAGAGTATGGATTTGGAGCTCATGACTTTCCAGCAAGTGGAGTATTTGAAGTAGAGCCAAAGAAGTGTCCTGGATTTATATACAGATGTTCTGTCAATTTAGGCCAAATAAACATGCATCCTTCTGAGTTTCGAACATTCATTGAGAGTATAGCTAATGAGTATCATGGAGATACTTACCACCTTATATCTAAGAACTGCAATCATTTCACGGATGATGTTTCAAATAGATTGAATGGAAAACGAATCCCAGGTTGGGTCAATCGTCTTGCTAGGCTAGGTTCACTTTGCAGTTGCCTACTTCCTGAGTGTGTTGAAGTAACTACTGTTAAACAACTACCGGAATACCATGACTGTTCAGAAGATGAAATCACTGATTCTCTTTCGTCTGCATCACCATGTGCATCTCAAGCAACATCAGTAATGGACGATGACCAAGAAAAGCACCTTTTGTCACCTTTTGCCAGCAAAGGAGAAAATGTTTCGTTTGTTAAAGAGGCACCATTAAAACTTATGTCACATGATGGAGGTGAGAAACACTTGGATAATGCATGCTGTGTTGGATTGAGTATTTGA 768 0.3945 MGTTKTSSNSTSKSDHNNNNNVNGDKDKRNTTRMVLNVYDLTPLNNYLYWFGFGIFHSGIEVHGKEYGFGAHDFPASGVFEVEPKKCPGFIYRCSVNLGQINMHPSEFRTFIESIANEYHGDTYHLISKNCNHFTDDVSNRLNGKRIPGWVNRLARLGSLCSCLLPECVEVTTVKQLPEYHDCSEDEITDSLSSASPCASQATSVMDDDQEKHLLSPFASKGENVSFVKEAPLKLMSHDGGEKHLDNACCVGLSI* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1191 255 MobiDBLite consensus disorder prediction 1 19 - -
Vra3g1191 255 Pfam PPPDE putative peptidase domain 33 166 IPR008580 GO:0008233
Vra3g1191 255 PANTHER DESUMOYLATING ISOPEPTIDASE 20 234 IPR008580 GO:0008233
Vra3g1191 255 ProSiteProfiles PPPDE domain profile. 32 169 IPR008580 GO:0008233
Vra3g1191 255 PANTHER THIOL PEPTIDASE FAMILY PROTEIN, PUTATIVE-RELATED 20 234 - -
Vra3g1191 255 SMART DUF862_2a 32 174 IPR008580 GO:0008233
Vra3g1191 255 MobiDBLite consensus disorder prediction 1 28 - -
Vra3g1191 255 Gene3D PPPDE domains 27 184 IPR042266 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1191 Vra-Chr3 12643858 12647056 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1191 K22763 - gmx:100810582 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2220 7 42239380 42243779 Vra3g1191 3 12643858 12647056 PCT