Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2209 ATGGCAAGTTATCAAACCAATGTAGATTCAAGTTTTGAACAGGGCAAAATGACAGATTCAAGGCAAGGTACAGCATCAATGGGTTCTTCGTCGCGAAGCCTTCCTGATTTCAAGAAATCTATTAAGCTCAAGTATGTGAAGCTTGGTTATCATTACCTGATAACTCATGGAATGTACCTTTGCCTTACTCCCCTTGTTTTGCTGATTGCTGCTCAGCTCTCCACCTTCTCCTTGCAAGACTTTTATGATATTTGGGAGCATCTGCAATACAACCTGATATCTGTCGTTCTCTGTTCGACTCTTCTTGTTTTCCTATCAACCCTTTACTTCCTCACTCGTCCTCGGCCAGTGTACCTTGTCAATTTCTCTTGTTACAAGCCTGAAGAGTCTCGGCAGTGCACAAAGAGGAAATTCATAGACCATTCCCGTTCGACCGGTTCTTTCACTGAGGAAAATCTTGAATTCCAGAGGAAGATCCTTGAGAGATCTGGCCTTGGGGAGACCACTTACCTTCCTGAAGCTCTCCTCAACATTCCTCCCAACCCTTCAATGGAAGAAGCTAGGAAAGAAGCTGCGGCTGTTATGTTTGGTGCCATTGATGAGCTATTAGCCAAAACCTCTGTAAAGCCTAAGGACATTGGGATTCTGATTGTAAACTGTAGTCTGTTCAACCCTACTCCATCACTTTCGGCAATGATTGTCAATCATTACAAGCTTCGGGGGAATATAAGGAGCTACAACCTTGGTGGAATGGGTTGCAGCGCAGGGCTGATCTCAATTGATCTTGCCAAAGATCTTCTCCAGGCCAATCCCAACTCCTATGCATTGGTCATCAGCATGGAGAATATCACATTGAATTGGTATTTTGGAAACGATCGATCGAAGCTTGTTTCCAATTGTTTATTTCGTATGGGAGGAGCTGCAGTTCTGCTCTCCAACAAAAGCTCGGACAGAAGAAGATCCAAATACAGATTGATCACCACGGTTCGCACTCATAAGGGTGCTGATGACAAGTGCTTTAGTTGTGTAACACATGAAGAAGATGCCAATGGCAAGGTTGGTGTTACTTTATCAAAAGATCTGATGGCTGTTGCTGGTGATGCTTTAAAAACCAATATCACTACACTGGGACCTCTCGTACTTCCGACATCAGAACAGCTTCTATTCTTTGCAACCTTAGTTGGGAAGAAAATTTTCAAGATGAAGATCAAGCCTTATATTCCAGATTTCAAGCTAGCTTTTGAACATTTTTGCATCCATGCTGGTGGTAGAGCAGTTTTGGATGAACTGGAGAAAAACTTGCAGCTGTCTCCTTGGCATATGGAGCCATCAAGAATGACCCTCTATCGTTTCGGAAACACATCCAGCAGTTCACTTTGGTATGAGCTGGCTTACACTGAAGCCAAAGGAAGGATCAGAAAAGGAGACAGAACATGGCAAATCGCATTTGGTTCTGGATTCAAGTGTAACAGTGCAGTGTGGAAGGCTCTCAGGACCATAGACTCTGCTAAGGAAAAGAGTCCTTGGATTGATGAGATCGATCAGTTTCCAGTGGATGTTCCTAGAGTATCTTTATTTTAA 1581 0.4333 MASYQTNVDSSFEQGKMTDSRQGTASMGSSSRSLPDFKKSIKLKYVKLGYHYLITHGMYLCLTPLVLLIAAQLSTFSLQDFYDIWEHLQYNLISVVLCSTLLVFLSTLYFLTRPRPVYLVNFSCYKPEESRQCTKRKFIDHSRSTGSFTEENLEFQRKILERSGLGETTYLPEALLNIPPNPSMEEARKEAAAVMFGAIDELLAKTSVKPKDIGILIVNCSLFNPTPSLSAMIVNHYKLRGNIRSYNLGGMGCSAGLISIDLAKDLLQANPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAVLLSNKSSDRRRSKYRLITTVRTHKGADDKCFSCVTHEEDANGKVGVTLSKDLMAVAGDALKTNITTLGPLVLPTSEQLLFFATLVGKKIFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSPWHMEPSRMTLYRFGNTSSSSLWYELAYTEAKGRIRKGDRTWQIAFGSGFKCNSAVWKALRTIDSAKEKSPWIDEIDQFPVDVPRVSLF* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2209 526 Gene3D - 121 496 IPR016039 GO:0016746
Vra7g2209 526 PIRSF Very_long_ch_3-ktacl-CoA_syn 36 526 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vra7g2209 526 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 415 495 IPR013747 -
Vra7g2209 526 SUPERFAMILY Thiolase-like 103 321 IPR016039 GO:0016746
Vra7g2209 526 SUPERFAMILY Thiolase-like 302 498 IPR016039 GO:0016746
Vra7g2209 526 PANTHER 3-KETOACYL-COA SYNTHASE 23 524 - -
Vra7g2209 526 PANTHER 3-KETOACYL-COA SYNTHASE 23 524 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vra7g2209 526 Pfam FAE1/Type III polyketide synthase-like protein 109 397 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vra7g2209 526 MobiDBLite consensus disorder prediction 1 33 - -
Vra7g2209 526 CDD CHS_like 102 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2209 Vra-Chr7 42080828 42083548 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2209 19 524 Miscellaneous Gene Families AT2G26640 82.411 0.0 897
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2209 K15397 - gmx:100817884 963.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2209 7 42080828 42083548 Vra7g2209 7 42080828 42083548 ECH
Vra7g2209 7 42080828 42083548 Vra2g1563 2 23529151 23531975 PCT