Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1563 ATGGCAGAGACAAAACCAGACACACCATTGATGCCACCGTCGTCGCGGAAGCTTCCAGATTTCAAGAAGTCCGTGAAATTGAAGTACGTGAAACTTGGTTATCATTACCTCATTACTCATGGCATGTACCTCTGTCTTTCCCCTCTGGTGGTGATCATTGCTGCACAGCTCTCAACCTTTTCCGTGAAAGATCTCCATGACATTTGGGAGAATCTACAATACAATTTGATATCCGTCATTCTTTGCTCCACCATGATTGTATTTTTGTCCACACTATACATTATGACTCGTCCAAGACCCGTGTACCTTGTCAATTTCTCATGTTACAAGCCTGAAGAAGCTCGCAAATGCACAAAGAAGATATTCATGGACCAGTCCAGGAGGAGTGGTTTTTTCACAGAGGAAAATCTTGAATTCCAGCGGAAGATTCTAGAGAGGGCTGGCCTTGGGGAAAGCACATACTTTCCAGAAGCTGTTCTCAATGATCCTCCCAACCCTTCAATGCAAGAGGCAAGAAAAGAGGCCGAGCTTGTCATGTTTGGTGCAATTGATGAGCTTTTTTCCAAGACTTTTGTGAAGCCTAAGGACATTGGAATTCTGATTGTGAATTGCAGCCTCTTCTGCCCCACGCCCTCACTTTCGGCAATGATCATCAATCATTATAAGCTTAGAGGGAACATAAAAAGCCTCAACCTTGGTGGAATGGGATGCAGTGCAGGTCTCATTTCAATTGATCTTGCCAAGGACCTTCTCCAAGTCCATCCCAATTCCTATGCATTGGTAGTTAGCACAGAAAACATCACCTTGAATTGGTACCCTGGGAATGACCGATCCAAGCTTGTTTCCAATTGTTTGTTCCGTATGGGAGGGGCTGCCATTCTGCTTTCCAACAAAAGCTCTGATAAAAGAAGATCCAAATACCGGTTGGTTGACACAGTTCGCACAAACAAGGCTTCTGATGACAAGTGCTTCGGCTGTGTTATCCAAGAGGAAGATTCCAATGGCAAGGTTGGTGTCACTTTGTCCAAAGATTTGATGGCAGTTGCTGGTGATGCTTTGAAAACAAACATCACCACATTGGGGCCTCTTGTCCTTCCAATGTCCGAACAACTCCTATTCTTTGCCACGTTGGTTGGGAAGAAGCTTTTCAAAATGAAGATCAAGCCTTATATTCCAGACTTCAAGCTGGCTTTTGAGCACTTCTGCATCCATGCCGGAGGCAGAGCCGTGTTAGACGAACTTGAGAAGAACTTGCAGCTGTCTACTTGGCATATGGAGCCATCAAGGATGACACTCTACCGTTTTGGAAACACCTCGAGCAGTTCTCTTTGGTATGAATTGGCATACACAGAAGCGAAAGGGAGGATGAGGAAGGGTGATAGAACATGGCAGATAGCATTCGGTTCTGGATTCAAGTGCAACAGTGCTGTGTGGAAGGCTCTCAGGACCATCAACCCTGCCAAAGAGAAAAACCCTTGGATGGATGAAATCCACAGTTTCCCAGTTGAAGTACCAAGGATTTCATCCTTCTAG 1533 0.4514 MAETKPDTPLMPPSSRKLPDFKKSVKLKYVKLGYHYLITHGMYLCLSPLVVIIAAQLSTFSVKDLHDIWENLQYNLISVILCSTMIVFLSTLYIMTRPRPVYLVNFSCYKPEEARKCTKKIFMDQSRRSGFFTEENLEFQRKILERAGLGESTYFPEAVLNDPPNPSMQEARKEAELVMFGAIDELFSKTFVKPKDIGILIVNCSLFCPTPSLSAMIINHYKLRGNIKSLNLGGMGCSAGLISIDLAKDLLQVHPNSYALVVSTENITLNWYPGNDRSKLVSNCLFRMGGAAILLSNKSSDKRRSKYRLVDTVRTNKASDDKCFGCVIQEEDSNGKVGVTLSKDLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSTWHMEPSRMTLYRFGNTSSSSLWYELAYTEAKGRMRKGDRTWQIAFGSGFKCNSAVWKALRTINPAKEKNPWMDEIHSFPVEVPRISSF* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1563 510 SUPERFAMILY Thiolase-like 85 305 IPR016039 GO:0016746
Vra2g1563 510 CDD CHS_like 86 478 - -
Vra2g1563 510 Pfam FAE1/Type III polyketide synthase-like protein 93 382 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vra2g1563 510 PANTHER 3-KETOACYL-COA SYNTHASE 11 3 509 - -
Vra2g1563 510 SUPERFAMILY Thiolase-like 286 482 IPR016039 GO:0016746
Vra2g1563 510 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 399 479 IPR013747 -
Vra2g1563 510 Gene3D - 106 480 IPR016039 GO:0016746
Vra2g1563 510 PIRSF Very_long_ch_3-ktacl-CoA_syn 20 510 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vra2g1563 510 PANTHER 3-KETOACYL-COA SYNTHASE 3 509 IPR012392 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1563 Vra-Chr2 23529151 23531975 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1563 9 509 Miscellaneous Gene Families AT2G26640 82.635 0.0 885
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1563 K15397 - gmx:100794273 984.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2209 7 42080828 42083548 Vra2g1563 2 23529151 23531975 PCT