Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1973 ATGTCACGGGCTCGTATTGCCGTCCACCGCTTCCGCTGTACCTACGCCGCATTATCGTCGATCACCTCATCTTCATCTGCAGTTACACGCTTTCAGTTCCAATGTCCACAACAACATCTAACGCACGCATCCCTCCCCTTTCACTTCCACTCTCGTTATTCTTCATCTGTCCCCAAACAAACCTTGAACGGTAGCGTCGAAAATTATCCGAGTGGGGACTTTGATTTCAAGCCCCTCACTGGCTGGAAAAAATTCATCGTCAAGCTCAAGATGCTAACGGCCTTACCCTGGCACCGGCTTCGATACGGCACCGTTTTGACAATCAAGTTGCGCGGCCAGGTATCGGATCAGCTGAAGAGTAGGTTCTCTCGGGGATTATCTCTGCCTCAAATCTGTGATAATTTCTTGAAGGCAGCTTATGATCCTCGAATTTCCGGTATCTATCTCCACATTGATATTTTAAATTGCGGCTGGGCAAAGGTTGAAGAAATTCGAAGGCACATATTCGATTTCAGAAAGTCAGGAAAGTTTATTGTGGCTTATGTCCCTTCCTGTCGAGAAAAAGAATATTATATTGCAAGTGCGTGTGAAGAAATATATGCCCCTCCAAGTGCTTATTTTTCCTTGTTTGGATTGACTGTTCAGGCTCCATTCTTCAGAGGTGTTTTAGAGAATCTTGGAATTGAACCAGAAGTAGAACGGATTGGCAAGTACAAAAGTGTAGGAGATCAACTTACCCGTAGAACCATGTCTGAAGATCATCATGAGATGCTTACTTCATTGCTTGATAATATCTATACACATTGGCTGGACAAAGTCTCTGCTGCTAGAGGAAAGAAAAGAGAAGATATTGAGAACTTCATAAATAAAGGTGTTTATCAAGTAGAGACACTTAAAGAGGAGGGCTTCATATCAGACATAGTCTATGAGGATGAGGTTATTACTAGGTTGAAGGAGAGACTTCAAGTAAAAACAAATAAAAATCTGCCTATGGTTGATTACAGAAAATACTCCGGAGTTAGGAAATCAACTGTTGGACTATCAAATGGTAAAGATTTAATAGCCATCATCCGAGCTTCAGGGAGTATTCGTCGTATTGAGAGTCCACTAGGTGCCCGTAGCTCAGGTATCATTGGAGAGAAGTTAATTGAGAAAATACGCAGTATAAGAGATTCAAATAAATACAAGGCTGCTATTATCCGAATTGACAGTCCAGGAGGGGATGCCCTTGCTTCTGATTTGATGTGGAGAGAAATCAGGCTTCTGGCTGCCTCAAAACCAGTCATTGCTTCAATGTCTGATGTGGCAGCAAGTGGAGGATACTACATGGCAATGGGAGCAGGAGTTATTGTGGCAGAAAGTCTTACCTTAACTGGCTCAATTGGAGTGGTCACAGGAAAGCTTAACCTTGGGAAACTCTATGAGAAGATTGGCTTCAACAAAGAAATCATATCAAGGGGTAGATATGCTGAGCTGCGGGCAGCTGAACAGCGTTCACTTAGACCAGATGAAGCAGAGCTATTTTCCAAGTCTGTTCAGCATGCTTATAAACAATTTCGAGATAAAGCAGCCTTTTCCCGATCTATGACTGTAGACAAGATGGAAGAGGTTGCACAGGGGAGGGTTTGGACTGGCAAGGATGCAGCTTCTAATGGTTTAATTGATGCTATTGGTGGCCTTTCTCGAGCTGTTGCGATAGCAAAATTGAAGGCCGGTATACCTCAAGATAGACAGGTTACTGTTGTGGAGGTCACAAGACCCAGCCCTTCTCTGCCCGAGATTTTGAGTGGTCTAGGTAATTCTCTCGTTGGAGTAGACAGAACTTTAAATGAATTACTACAGGACTTGACATTTTCCAATGGAGTCCAAGCTCGGATGGACGGAATCGTGTTTGAGAAATTGGAAGGTTATCCATACGCCAACCCCATTTTGGCATTGATAAAAGATTATCTTAGTTCCCTTTAG 1965 0.4321 MSRARIAVHRFRCTYAALSSITSSSSAVTRFQFQCPQQHLTHASLPFHFHSRYSSSVPKQTLNGSVENYPSGDFDFKPLTGWKKFIVKLKMLTALPWHRLRYGTVLTIKLRGQVSDQLKSRFSRGLSLPQICDNFLKAAYDPRISGIYLHIDILNCGWAKVEEIRRHIFDFRKSGKFIVAYVPSCREKEYYIASACEEIYAPPSAYFSLFGLTVQAPFFRGVLENLGIEPEVERIGKYKSVGDQLTRRTMSEDHHEMLTSLLDNIYTHWLDKVSAARGKKREDIENFINKGVYQVETLKEEGFISDIVYEDEVITRLKERLQVKTNKNLPMVDYRKYSGVRKSTVGLSNGKDLIAIIRASGSIRRIESPLGARSSGIIGEKLIEKIRSIRDSNKYKAAIIRIDSPGGDALASDLMWREIRLLAASKPVIASMSDVAASGGYYMAMGAGVIVAESLTLTGSIGVVTGKLNLGKLYEKIGFNKEIISRGRYAELRAAEQRSLRPDEAELFSKSVQHAYKQFRDKAAFSRSMTVDKMEEVAQGRVWTGKDAASNGLIDAIGGLSRAVAIAKLKAGIPQDRQVTVVEVTRPSPSLPEILSGLGNSLVGVDRTLNELLQDLTFSNGVQARMDGIVFEKLEGYPYANPILALIKDYLSSL* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1973 654 SUPERFAMILY ClpP/crotonase 354 559 IPR029045 -
Vra7g1973 654 TIGRFAM SppA_dom: signal peptide peptidase SppA, 36K type 355 568 IPR004635 GO:0006508|GO:0008233
Vra7g1973 654 PIRSF Protease_4_SppA 39 654 IPR004634 GO:0006465|GO:0008233|GO:0016021
Vra7g1973 654 Pfam Peptidase family S49 422 572 IPR002142 GO:0006508|GO:0008233
Vra7g1973 654 Pfam Peptidase family S49 171 323 IPR002142 GO:0006508|GO:0008233
Vra7g1973 654 PANTHER PROTEASE 4 51 653 - -
Vra7g1973 654 Gene3D - 101 213 - -
Vra7g1973 654 Gene3D - 511 623 - -
Vra7g1973 654 SUPERFAMILY ClpP/crotonase 96 312 IPR029045 -
Vra7g1973 654 CDD S49_SppA_67K_type 106 319 - -
Vra7g1973 654 CDD S49_Sppa_N_C 354 568 IPR002142 GO:0006508|GO:0008233
Vra7g1973 654 Gene3D - 348 500 - -
Vra7g1973 654 Gene3D - 214 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1973 Vra-Chr7 39220573 39229460 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1973 K04773 - gmx:100809623 1103.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1973 7 39220573 39229460 Vra7g1973 7 39220573 39229460 ECH
Vra7g1973 7 39220573 39229460 Vra2g1611 2 24124500 24139828 PCT