Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1611 ATGAGTTCCTCCTTTTCCCTTCTTACTCTCATCCATCATCCTTGCTCACTTCACACCATTACTGCACAAATGTCGAACCTGCTTCTTCTACCTTCTCTTCCCCTCACCACTTCCCCTCACCGCTTTCAAACTTTTTCTTCCGCTTCTCCTCTTCAATTCCAATGCCGATTCTCGCTTTCTCTCCTCTCTCCTCCTCACCACTCTCTCTCTCCCTTCCGCTCCCACGCGCGCAGAAGAGAACCTTCCCTTCGCGTTTTCGATTCCTCTTCCGAGGCCATAACCAACGAAGGATTGAAAGAAGTGGCAAAGGACGAGGGCGTTGAAGATAAGAGTGTCGGGATTACGGACGAGGAATATCCTAGTGGCGAATTCGATTTCAAACCGGTTACCGGATGGAGAAGCTTCCTCGTTAAGCTTAAGATGCTGGTTGCGTTCCCATGGGAGCGTGTGCGCAAGGGAAGCGTTCTCACAATGAAGCTTCGTGGCCAGATATCTGATCAAGTGAAGAGTAGGTTCTCTCCGGGACTTTCTCTGCCTCAAATTTGTGAGAACTTTTTGAAAGCAGCATACGATCCTCGTATTTCTGGGATCTATCTTCATATTGATAGTTTAAATTGCGGGTGGGGTAAAGTAGAAGAAATTCGAAGGCATATATCAGATTTCAAAAAATCAGGAAAATTTATTCTGGCTTATGTGCCTTTATGTCAAGAAAAAGAATATTACCTTGCATGTGCATGTGACGAGATATACTCTCCACCCAGTGCTTACTTTTCTTTGTTTGGATTGACTGTTCAAGCCTCATTCCTCAGAGGTATTTTAGATAACATAGGAATTGAACCGCAAGTGGAAAGGATTGGAAAATACAAAAGTGCAGGTGATCAACTAGCTCGAACAACCATGTCTGAGGAAAATTGTGAGATGCTGACTGCATTGCTTGATAATATCTATACAAATTGGCTAGATAAAGTCTCTTCTGCCAAAGGAAAAAGTAAAGAAGATATTGAGAAACTCATAAATGAAGGTGTTTATCGAGTAGACAAGCTGAAAGAAGAAGGACTCATATCAAATATAATCTATGATGACGAGATTATTACCATGTTGAAGGAGAGACTTGGAGTGAAACTTGATAAAGATTTGCCAATGGTGGACTACAGGAAATACTCTCGAGTTAGGAAATGGACTGTTGGAATATCAGGCGGCAGAGAACTTATAGCCATTATCCGAGCATCAGGGAGCATTAGTCGTGTAGAGAGTCAATTAAGTGTCTCTAGCTCAGGCATCACTGCAGAGAAGTTTATTGAAAAGATTCGAACTGTCAGAGAGTCAAAAAAATTTAAGGCTGCTATCATTAGAATTGACAGCCCTGGAGGTGATGCTCTTGCTTCTGATCTGATGTGGAGAGAAATCCGGCTTTTGGCTGCTAAAAAACCGGTCATTGCTTCAATGTCTGATGTGGCAGCAAGCGGAGGGTACTATATGGCAATGGGAGCTGATGCTATTGTTGCAGAAAGCCTTACCTTAACCGGTTCAATTGGAGTGGTCACAGGAAAATTTAACCTGGGGAAACTGTATGAGAAGATTGGCTTTAACAAAGAAATTATATCAAGGGGAAGATATGCTGAGGTCCTTGCTGCTGAACAACGTCCTTTCAGACCGGATGAAGCAGAGTTATTTGCCGAATCTGCTAGGCATGCTTATAAACAATTTCGGGACAAGGCTGCATTGTCCAGATCAATGACCGTAGAAAAGATGGAGGAGGTTGCACAGGGAAGGGTTTGGACTGGTAACGACGCAGCATCGCGTGGTTTAGTTGATGCTATTGGCGGGCTTTCCCGTGCTATTGCCATAGCAAAAGTTAAGGCCAATATACCTCAAGACAGTCAGGTTACACTTGTGGAGATATCCAGACCCAGCCCTTCTCTACCCGAGATCTTGTTAGGTGTTGGGAGTTCCCTCGTTGGAGCTGACAGAATGGTGAAGGAGCTGCTACAGGGCATGACATTTTCTGATGGAGTTCAAGCCCGGATGGATGGAATCATGTTTCAGACATTGGAAGAATATCCTTTTGGAAATCCCATTTTGTCAATAATAAAATCTTACCTCAGTTCCCTGTAG 2115 0.4369 MSSSFSLLTLIHHPCSLHTITAQMSNLLLLPSLPLTTSPHRFQTFSSASPLQFQCRFSLSLLSPPHHSLSPFRSHARRREPSLRVFDSSSEAITNEGLKEVAKDEGVEDKSVGITDEEYPSGEFDFKPVTGWRSFLVKLKMLVAFPWERVRKGSVLTMKLRGQISDQVKSRFSPGLSLPQICENFLKAAYDPRISGIYLHIDSLNCGWGKVEEIRRHISDFKKSGKFILAYVPLCQEKEYYLACACDEIYSPPSAYFSLFGLTVQASFLRGILDNIGIEPQVERIGKYKSAGDQLARTTMSEENCEMLTALLDNIYTNWLDKVSSAKGKSKEDIEKLINEGVYRVDKLKEEGLISNIIYDDEIITMLKERLGVKLDKDLPMVDYRKYSRVRKWTVGISGGRELIAIIRASGSISRVESQLSVSSSGITAEKFIEKIRTVRESKKFKAAIIRIDSPGGDALASDLMWREIRLLAAKKPVIASMSDVAASGGYYMAMGADAIVAESLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGRYAEVLAAEQRPFRPDEAELFAESARHAYKQFRDKAALSRSMTVEKMEEVAQGRVWTGNDAASRGLVDAIGGLSRAIAIAKVKANIPQDSQVTLVEISRPSPSLPEILLGVGSSLVGADRMVKELLQGMTFSDGVQARMDGIMFQTLEEYPFGNPILSIIKSYLSSL* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1611 704 PANTHER PROTEASE 4 86 703 - -
Vra2g1611 704 TIGRFAM SppA_dom: signal peptide peptidase SppA, 36K type 404 618 IPR004635 GO:0006508|GO:0008233
Vra2g1611 704 SUPERFAMILY ClpP/crotonase 145 362 IPR029045 -
Vra2g1611 704 Gene3D - 400 548 - -
Vra2g1611 704 Gene3D - 296 389 - -
Vra2g1611 704 Gene3D - 153 295 - -
Vra2g1611 704 CDD S49_Sppa_N_C 404 618 IPR002142 GO:0006508|GO:0008233
Vra2g1611 704 Pfam Peptidase family S49 472 622 IPR002142 GO:0006508|GO:0008233
Vra2g1611 704 Pfam Peptidase family S49 221 373 IPR002142 GO:0006508|GO:0008233
Vra2g1611 704 CDD S49_SppA_67K_type 156 369 - -
Vra2g1611 704 Gene3D - 550 673 - -
Vra2g1611 704 SUPERFAMILY ClpP/crotonase 404 609 IPR029045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1611 Vra-Chr2 24124500 24139828 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1611 K04773 - gmx:100781522 1105.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1973 7 39220573 39229460 Vra2g1611 2 24124500 24139828 PCT