Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1953 ATGAGGTGGGAAAAGGTTGAGGTGAAGGCGATAGGCACAGAGGGTGGTGGAGGTGGAAATGAAGTATATGGGCCAGGGAAAAGGTGGGGTCACACCTGCAACGCCGTCAAAGGTGGTAGACTTGTCTATGTCTTCGGTGGATACGGCAAAGATAACTGTCAAACCAACCAAGTTCATGTCTTTGACACTGTGAAGCAGACTTGGAGCCAACCCACCGTAAAAGGCTCCCCACCTACTCCTAGAGACAGCCACACTTGCACAGCCATTGGTGATAATCTGTTTGTGTTTGGGGGTACGGATGGGATGAACCCTCTCAAGGATTTGCACATATTGGACACTTCATTGCATACATGGGTTTCTCCCACCATAAGAGGACAAGGGCCACCGGCACGTGAGGGTCATAGTGCAGCAGTTGTTGGAAAACGCCTATTCATCTTTGGTGGTTGTGGAAAATCTGCAGATAGTAATAATGAGGTCTACTACAATGATCTTTACATACTAAATACAGAGACATTTGTGTGGAAGTGTGCTACTACATCAGGCACTCCACCATCTCCTCGTGATAGCCACTCTTGTTCATCTTGGAAAAATAAAATTATTGTAGTAGGAGGTGAAGATGGACATGATTATTACTTGTCCGATGTCCATATCCTTGATACTGATACTTTAATCTGGAGAGAGCTGAGTACATCAGGCCAATTATTGCCTCCTCGAGCTGGTCATTCAACTGTTTCTTTTGGCAAGAACTTGTTCGTTTTTGGGGGATTTACAGATGCCCAAAATCTCTATAATGACCTTTATATGCTTGATATTGACACTGGCGCTTGGACAAATGTCACATCTTCAACCAATGGTCCGTCTGCTAGATTTTCTGTGGCTGGTGACTGTTTAGACCCTTTTAAGGGGGGTGTTCTTGTGTTCATAGGTGGTTGTAATAAAAGTCTTGAGGCCCTGGATGATATGTATTACCTATATACAGGGATTGCACGGGAAAGTGAACAGAGACCAGAGAAGTTATCTTTAAGGAAGCAATTGAAATTGAAGTGCCAAGAACAAAATCCCAATCCTAGCCAAAATCAAGTTCTAGCAAGATATGGTGTTGGTTCTGATATGGGCCAGATCATGTCAGTGTTGAATTATAGCCAGCAAAGCAGGCTAAATATCCCAGTAAACCAATCCCTACCTCCTGGAAAGAAAATGTTTGAAGCCAAGGTCACTGAAAACATCTCAGAAGGATATACTATTGAAACTGTTATTGATGGAAAGCCTCTTCGTGGAATACTGTTTTTAAACAAGCCAAATTCTCTGTACTCTTCTGCTCATACTCCCAGTAGGAAAAGGACTCTTAGTGAGATTGATAGTGTTGTCTTGAATGGTATACACTCTAACCAATTAAAGACTCCTAAAGTACTCAAGCAAAATCAAATGGAAAACCAAGAAGCATTTTATGGAGACAGTTCAGAATCTCATGAACACCGCACTGAATCCATTGCAGTGGTAATGTCAAGTAACCCAGTGACTGCTGATGCTTCTGATACCCATAAGGTTTCTGCCAACCAAGAACCAGAAGCTGCTGCTTTGAATCAAAATGATGAAAAACATGAAACACCCATATCCTTAAGTGAAAACTTGAAAGAAGATGGTGCAAATGATGTGATATGTTCCAGAGATGAGGTGCAAACAAATGATCAAACAAATGTGCCAATTTCCAACTTTGAACTTACAAGACATGATACAAAATTTGATGCTCCAAATTACAACACTGAATTTCAGAAACCTGCTGCATCTGAGAGTGTTTTGTGCCTGTCAAATCAAGGTGCAGTGGTGGATTCCACAACTCCAACAACAGAATGCAGCGAAGCAGCAACATTAATTTGA 1878 0.4201 MRWEKVEVKAIGTEGGGGGNEVYGPGKRWGHTCNAVKGGRLVYVFGGYGKDNCQTNQVHVFDTVKQTWSQPTVKGSPPTPRDSHTCTAIGDNLFVFGGTDGMNPLKDLHILDTSLHTWVSPTIRGQGPPAREGHSAAVVGKRLFIFGGCGKSADSNNEVYYNDLYILNTETFVWKCATTSGTPPSPRDSHSCSSWKNKIIVVGGEDGHDYYLSDVHILDTDTLIWRELSTSGQLLPPRAGHSTVSFGKNLFVFGGFTDAQNLYNDLYMLDIDTGAWTNVTSSTNGPSARFSVAGDCLDPFKGGVLVFIGGCNKSLEALDDMYYLYTGIARESEQRPEKLSLRKQLKLKCQEQNPNPSQNQVLARYGVGSDMGQIMSVLNYSQQSRLNIPVNQSLPPGKKMFEAKVTENISEGYTIETVIDGKPLRGILFLNKPNSLYSSAHTPSRKRTLSEIDSVVLNGIHSNQLKTPKVLKQNQMENQEAFYGDSSESHEHRTESIAVVMSSNPVTADASDTHKVSANQEPEAAALNQNDEKHETPISLSENLKEDGANDVICSRDEVQTNDQTNVPISNFELTRHDTKFDAPNYNTEFQKPAASESVLCLSNQGAVVDSTTPTTECSEAATLI* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1953 625 Pfam Galactose oxidase, central domain 186 231 - -
Vra7g1953 625 Pfam Galactose oxidase, central domain 237 283 - -
Vra7g1953 625 Gene3D - 154 401 IPR015915 GO:0005515
Vra7g1953 625 Gene3D - 2 152 IPR015915 GO:0005515
Vra7g1953 625 Pfam Galactose oxidase, central domain 40 89 - -
Vra7g1953 625 PANTHER KELCH REPEAT DOMAIN 1 542 - -
Vra7g1953 625 SUPERFAMILY Galactose oxidase, central domain 210 317 IPR011043 -
Vra7g1953 625 SMART kelc_smart 249 295 IPR006652 GO:0005515
Vra7g1953 625 SMART kelc_smart 92 141 IPR006652 GO:0005515
Vra7g1953 625 SMART kelc_smart 198 248 IPR006652 GO:0005515
Vra7g1953 625 SMART kelc_smart 41 91 IPR006652 GO:0005515
Vra7g1953 625 PANTHER GALACTOSE OXIDASE/KELCH REPEAT SUPERFAMILY PROTEIN 1 542 - -
Vra7g1953 625 Pfam Kelch motif 128 172 - -
Vra7g1953 625 SUPERFAMILY Galactose oxidase, central domain 24 229 IPR011043 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1953 Vra-Chr7 38997362 39004204 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1953 55 314 Acyl Lipid Metabolism Gene Families AT3G05420 29.603 6.27e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1953 - - gmx:100820222 1111.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1953 7 38997362 39004204 Vra7g1953 7 38997362 39004204 ECH
Vra7g1953 7 38997362 39004204 Vra2g1599 2 23987924 23994228 PCT