Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1906 ATGTTGATCAAAGGCAGCAGAAGAGTTGTTCAAGAGCACTTGTTGTTCCTATTAGAGAATTGCAACAGCGTAAACGCCCTCATTCAAATTCACACACAAGTACTTCTCAATGGTCTCTCTCACAAGAACATTATAATCGCCAAGCTTCTTTCCTTCTACATTGCCTCTGGCGATCTCCGACATGCCCACCACCTTTTGGCCAAAATGAACAACCCAACAACCATCGTTTGGAACCACGTCATCAGAGGTTACGCCCGCAGCCACATGCCTTGGAAATCGGTCCAATGTTACACCCACATGCTGTCTTCTGAGGCTCAGCCGGATGGGTTCACGTACTCGTCTCTCCTCAGTGCATGTGCGCGAGGTGGGTTGGAAAAAGAAGGGGAACAGCTGCATGCCACGGTTTTAGTAAAAGGGTATTGCTCCAATGTCTTTGTGGACACAAGTTTGATCAATTTCTATGCGAGGCGAGATGGCGTCCAGCGAGCGCGCCATGTGTTTGACGATATGGCGGAGAGAAGTGTTGTTAGCTGGAATTCTATACTTGCTGGGTATGTCAGGTGTGGCGATTTTGATGGGGCTTTGAGGGTTTTTGACATGATGCCATGTAGGAATGTTGTGTCTTGGACCACCATGGTTTCTGGGTGTGCTCGGAATGGGAAGTGCAGACAGGCTTTGTTGTTGTTTGGTGAGATGAGGAGGGCTCGTGTGGCGTTGGATCAGGTGGCATTGGTGGCGGCTTTGTCTGCTTGTGCTGAATTAGGGGATCTGAAGTTGGGAAGATGGATCCATTGGTATGTTCAACAATGGTTTGTTGCCAGGAACGAACAACCGTCAGTGCGCTTGAACAATGCACTCATACACATGTATGCTAGTTGTGGAATCATTCACGAAGCTTATCAACTGTTTGTCAAGATGCCTTGGAAAAGCACTGTGTCTTGGACTAGCATGATCATGGCTTTTGCGAAACAGGGACTGGGGAAGGAAGCCCTTGATACGTTTAAAACCATGCTTAGTGACGGTGTGGGAGTAAATGGAGTAAGTCCTGATGAAATCACCTTCATCGGAGTTCTCTGTGCTTGTAGCCATGCAGGGTTTGTGGATGAAGGGCGCCAAATTTTTGCATCCATGAAGCATACTTGGGGAATCAACCCGAGGATTGAACACTATGGATGCATGGTTGATCTGTTGAGCCGTGCTGGATTCTTAGATGAAGCACGTGGACTAATTGAAACTATGCCCTTAAAGCCTAATGATGCCCTTTGGGGTGCCCTTCTTGGTGGTTGTCATATTCACAAGAATTCAGATCTAGCATCACAAGTGGAAAACAAGTTAGTACCCGAGCTCAGCGTTGATCAAGCTGCAGGCTATCTTGTGCTTTTGTCAAACATATATGCCTTTGGTCAAAGGTGGCAGGATGTCATTACAGTGAGACAGAAAATGATCGAGATGGGTGTGAAAAAGCCTCCCGGCAGAAGTTGGATCCAAATTAATGGAGCTGTCCATAATTTTGTTGCGGGTGACATTACTCATAAGCATTCATATTTTATCTATGAAATCCTGTATGATGTCACAAAGCAAGCCAATTTGGAAGGCTATGAATCAAAGATAAATATTTTCTTGGATATTGAATTGTAA 1638 0.4579 MLIKGSRRVVQEHLLFLLENCNSVNALIQIHTQVLLNGLSHKNIIIAKLLSFYIASGDLRHAHHLLAKMNNPTTIVWNHVIRGYARSHMPWKSVQCYTHMLSSEAQPDGFTYSSLLSACARGGLEKEGEQLHATVLVKGYCSNVFVDTSLINFYARRDGVQRARHVFDDMAERSVVSWNSILAGYVRCGDFDGALRVFDMMPCRNVVSWTTMVSGCARNGKCRQALLLFGEMRRARVALDQVALVAALSACAELGDLKLGRWIHWYVQQWFVARNEQPSVRLNNALIHMYASCGIIHEAYQLFVKMPWKSTVSWTSMIMAFAKQGLGKEALDTFKTMLSDGVGVNGVSPDEITFIGVLCACSHAGFVDEGRQIFASMKHTWGINPRIEHYGCMVDLLSRAGFLDEARGLIETMPLKPNDALWGALLGGCHIHKNSDLASQVENKLVPELSVDQAAGYLVLLSNIYAFGQRWQDVITVRQKMIEMGVKKPPGRSWIQINGAVHNFVAGDITHKHSYFIYEILYDVTKQANLEGYESKINIFLDIEL* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1906 545 PANTHER OS09G0411600 PROTEIN 6 522 - -
Vra7g1906 545 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 6 522 - -
Vra7g1906 545 Pfam PPR repeat family 72 121 IPR002885 -
Vra7g1906 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Vra7g1906 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 108 142 IPR002885 -
Vra7g1906 545 Gene3D Tetratricopeptide repeat domain 346 511 IPR011990 GO:0005515
Vra7g1906 545 TIGRFAM PPR: pentatricopeptide repeat domain 176 206 IPR002885 -
Vra7g1906 545 TIGRFAM PPR: pentatricopeptide repeat domain 312 345 IPR002885 -
Vra7g1906 545 TIGRFAM PPR: pentatricopeptide repeat domain 207 240 IPR002885 -
Vra7g1906 545 Gene3D Tetratricopeptide repeat domain 265 345 IPR011990 GO:0005515
Vra7g1906 545 Gene3D Tetratricopeptide repeat domain 11 152 IPR011990 GO:0005515
Vra7g1906 545 Gene3D Tetratricopeptide repeat domain 153 259 IPR011990 GO:0005515
Vra7g1906 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 73 107 IPR002885 -
Vra7g1906 545 Pfam E motif 432 496 IPR046848 -
Vra7g1906 545 Pfam PPR repeat 389 413 IPR002885 -
Vra7g1906 545 Pfam PPR repeat 207 236 IPR002885 -
Vra7g1906 545 Pfam PPR repeat 176 205 IPR002885 -
Vra7g1906 545 Pfam PPR repeat 353 378 IPR002885 -
Vra7g1906 545 Pfam PPR repeat 148 174 IPR002885 -
Vra7g1906 545 Pfam PPR repeat 284 307 IPR002885 -
Vra7g1906 545 Pfam PPR repeat 312 342 IPR002885 -
Vra7g1906 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 310 344 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1906 Vra-Chr7 38554447 38556084 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1906 29 541 Glycoside Hydrolase AT3G49170 30.309 6.02e-79 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1906 - - gmx:100813379 854.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1038 4 17591761 17594781 Vra7g1906 7 38554447 38556084 ECH
Vra7g1906 7 38554447 38556084 Vra7g1906 7 38554447 38556084 ECH