Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1038 ATGATAAGGAAAAGAACAGGCACCATCATTGCTGTTTCCAACGTTGGAACACTCAAACAAATTCGCGCCTTAATGATCGTTAATGGTTTTACTTCCAACGTTGGATTCCTCCGAAAACTCGTCCTCGCCGCAGCCATGTCAATGGTCGGCCCCACGGCTAATGCCGCTGTGACACAATACGCACTCCAAATGTTCGCTCAAATTCCCCAACCAGACACCTTCATGTGGAACACCATCATCAGAGGCTCTTCTCAGAGCCGTGATCCCTTGCACGCGGTGGCACTGTATGCCCAGATGGACCAGCGTTCCGTTAAGCCTGATAAGTTCACATTCCCATTTGTTCTCAAGGCTTGCACCAAGCTCGTCTGGGTCAAAACTGGTTCCGCTGTTCATGGTAGGGTATTGAGGCTTGGGTTTGGTTCAAATGTGGTTGTGAGGAACACCCTTTTGTTTTTCCATGCTAAATGTGGAGACTTGAAGATTGCTACTGAGATTTTTGATGATTCGGATAAGAGGGATGTGGTTGCTTGGTCTGCACTCATTGCTGGGTATGCCCAAAGAGGGGATTTGAGTGTTGCACGGAAACTGTTTGATGAAATGCCCAATAGAGATTTGGTGTCATGGAATGTGATGATCACAGCCTACACAAAGCATGGTGAGATGAAGTGTGCTAGAAAACTTTTTGATGAATCTCCTTTGAGGGATGTTGTTAGTTGGAATACGATGATCGGTGGTTATGTGCTTCGTGGTTTGAACCGGGAGGCGTTGGAGTTGTTTGATGAGATGTGTACAGTTGGGGAGTGTCCCGATGAAGTAACAATGTTGAGCTTGGTGTGTGCTTGTACTGATTTGGGGGATTTAGAGAGTGGCGAGAAGGTGCACACCAAGATCATGGAAATGAGTAAGGGAAAGTTTAGCACGTTGTTGGGAAATGCTCTTGTTGATATGTATGCCAAGTGTGGAAATATTAGGAAAGCAATTCATGTGTTTCGGTTGATAAGAGATAAAGATGTGGTCTCGTGGAACACGGTCATTAGTGGGTTGGCCTTTCATGGCCATGCTGAGGAATCACTTGGTCTGTTTAGGGAAATGCAGAGTACCAAGGTTTGTCCAGATGAGATCACTTTTGTTGGTGTTTTGGCAGCTTGTAGTCATGTCGGGAATGTTGATGAGGGTAATCGTTATTTTCATCTTATGAGAAGTAAGTACAAGATTGAGCCAAACATTAGACATTGTGGGTGCGTGGTGGACATGCTGGGACGTGCTGGACTTTTGAAGGAAGCGTTTGATTTCATAGCTTGCATGAAAATTGAACCAAATGCAATTATTTGGAGGAGTTTGCTTGGAGCTTGCAAAGTTCATGGAGACGTGGATTTGGCAAAACAAGCAAATGAGCAGCTGCTCAGAATGAGAGGGAATCAAAGTGGGGACTATGTGTTGTTGTCAAATGTATATGCTTCACAAGGTGAATGGAATGGTGCTGAGAAGATAAGGAAGCTGATGGACGACAATGGTGTGACCAAAAATCGCGGCTCTAGCTTTGTTGAGACACACAGTTGA 1560 0.4513 MIRKRTGTIIAVSNVGTLKQIRALMIVNGFTSNVGFLRKLVLAAAMSMVGPTANAAVTQYALQMFAQIPQPDTFMWNTIIRGSSQSRDPLHAVALYAQMDQRSVKPDKFTFPFVLKACTKLVWVKTGSAVHGRVLRLGFGSNVVVRNTLLFFHAKCGDLKIATEIFDDSDKRDVVAWSALIAGYAQRGDLSVARKLFDEMPNRDLVSWNVMITAYTKHGEMKCARKLFDESPLRDVVSWNTMIGGYVLRGLNREALELFDEMCTVGECPDEVTMLSLVCACTDLGDLESGEKVHTKIMEMSKGKFSTLLGNALVDMYAKCGNIRKAIHVFRLIRDKDVVSWNTVISGLAFHGHAEESLGLFREMQSTKVCPDEITFVGVLAACSHVGNVDEGNRYFHLMRSKYKIEPNIRHCGCVVDMLGRAGLLKEAFDFIACMKIEPNAIIWRSLLGACKVHGDVDLAKQANEQLLRMRGNQSGDYVLLSNVYASQGEWNGAEKIRKLMDDNGVTKNRGSSFVETHS* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1038 519 Pfam PPR repeat family 336 383 IPR002885 -
Vra4g1038 519 Pfam PPR repeat family 71 119 IPR002885 -
Vra4g1038 519 Pfam PPR repeat family 234 281 IPR002885 -
Vra4g1038 519 Gene3D Tetratricopeptide repeat domain 129 203 IPR011990 GO:0005515
Vra4g1038 519 Pfam PPR repeat 175 203 IPR002885 -
Vra4g1038 519 Pfam PPR repeat 206 230 IPR002885 -
Vra4g1038 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 371 IPR002885 -
Vra4g1038 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 72 106 IPR002885 -
Vra4g1038 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 207 IPR002885 -
Vra4g1038 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 235 269 IPR002885 -
Vra4g1038 519 Gene3D Tetratricopeptide repeat domain 19 120 IPR011990 GO:0005515
Vra4g1038 519 Gene3D Tetratricopeptide repeat domain 309 518 IPR011990 GO:0005515
Vra4g1038 519 Gene3D Tetratricopeptide repeat domain 204 308 IPR011990 GO:0005515
Vra4g1038 519 TIGRFAM PPR: pentatricopeptide repeat domain 175 205 IPR002885 -
Vra4g1038 519 TIGRFAM PPR: pentatricopeptide repeat domain 375 408 IPR002885 -
Vra4g1038 519 TIGRFAM PPR: pentatricopeptide repeat domain 311 339 IPR002885 -
Vra4g1038 519 TIGRFAM PPR: pentatricopeptide repeat domain 237 271 IPR002885 -
Vra4g1038 519 TIGRFAM PPR: pentatricopeptide repeat domain 75 107 IPR002885 -
Vra4g1038 519 TIGRFAM PPR: pentatricopeptide repeat domain 339 373 IPR002885 -
Vra4g1038 519 TIGRFAM PPR: pentatricopeptide repeat domain 206 230 IPR002885 -
Vra4g1038 519 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 11 187 - -
Vra4g1038 519 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 186 217 - -
Vra4g1038 519 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 217 517 - -
Vra4g1038 519 Pfam E motif 454 516 IPR046848 -
Vra4g1038 519 PANTHER OS03G0168550 PROTEIN 186 217 - -
Vra4g1038 519 PANTHER OS03G0168550 PROTEIN 217 517 - -
Vra4g1038 519 PANTHER OS03G0168550 PROTEIN 11 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1038 Vra-Chr4 17591761 17594781 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1038 59 516 Glycoside Hydrolase AT3G49170 31.412 2.62e-80 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1038 - - gmx:100790367 917.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1038 4 17591761 17594781 Vra7g1906 7 38554447 38556084 ECH
Vra4g1038 4 17591761 17594781 Vra4g1038 4 17591761 17594781 ECH