Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1649 ATGGCATCTAGTGTTGTCTGTCAATATCCGACCAAAGCACAACTTCAGGTTCAGAATTTTGATGATGAAAACGTTGTAACACCAGAAGCTAATAATGGAAAGAAGGAGTGTAATGTAGCACCTAAAGACACATCTCCTACGCTTCCTGGGTGGTATGCTGACGTATCTTGGCCAGGAGAAGCACACATATATAAAATGGAGAAAATCATATTCCAAGGGAAATCAGAATTCCAAGAGCTTCTTGTATTTGAGTCATCCAGGCATGGCAAGGTTGCAATTCTGGATGGGTATATCCAGCTGACAGAGAACGATGAATTTGCTTACCAAGAGATGCTCACTCACCTTGCACTCTGTTCCGTTCCAAATCCAAAGAAGGTACTGCTAGTTGGAGGGGGAGATGGTGGAATTCTTAGGGAAATATCACGTCATTCATCTGTTGAACACATTGATATATGTGAAATAGACAAAATGGTGATTGATGTTTATAAGAAGTTTTTCCCAGATATAGCCGTTGGTTACGAGGATCCTCGAGTGCATGTTCACATCAGAGATGGAATTGCGTTCATCAATTCTGTTCCTGAGGGCACGTACGATGTCATTATATTGGATGCTTTCCAACCAATGGGACCTATTGCGGAAGTTCTTGCTGATAACTGCTTCTTAGATTCAGTAGCAAAGGCTCTTCGACCTGGTGGAGTGTTGTCTGCTCCAGCAGACAGCTTGTGGCATAAGAACTTTGTAGTTGCAGAGACAATAGCAAAATGCAAGAATATATTCAAAGGCTCCGTTAATTATGCTTGGACCACAGTTCCTACATATGCAAGTGGGGTGATTGGGTTCATGCTTTGCTCCACAGAGGGTCCCCCAGTCAACTTCAAACACCCAATAAATCCATTGAACACGGAGCAAAATGGGGTCGCAAAGGGACCTCCTAAGTTCTATAACTCAGAGATCCATTCTGCTGCATTCTGTCTTCCTTCTTTTGTGGACAAGGATGTTGATCCAAAAAGATGTTGA 1017 0.4267 MASSVVCQYPTKAQLQVQNFDDENVVTPEANNGKKECNVAPKDTSPTLPGWYADVSWPGEAHIYKMEKIIFQGKSEFQELLVFESSRHGKVAILDGYIQLTENDEFAYQEMLTHLALCSVPNPKKVLLVGGGDGGILREISRHSSVEHIDICEIDKMVIDVYKKFFPDIAVGYEDPRVHVHIRDGIAFINSVPEGTYDVIILDAFQPMGPIAEVLADNCFLDSVAKALRPGGVLSAPADSLWHKNFVVAETIAKCKNIFKGSVNYAWTTVPTYASGVIGFMLCSTEGPPVNFKHPINPLNTEQNGVAKGPPKFYNSEIHSAAFCLPSFVDKDVDPKRC* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1649 338 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 126 139 IPR030373 -
Vra7g1649 338 CDD AdoMet_MTases 147 234 - -
Vra7g1649 338 TIGRFAM speE: spermidine synthase 51 328 IPR001045 GO:0003824
Vra7g1649 338 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 51 331 IPR029063 -
Vra7g1649 338 PANTHER SPERMIDINE/SPERMINE SYNTHASE 19 333 IPR001045 GO:0003824
Vra7g1649 338 Gene3D Vaccinia Virus protein VP39 102 337 IPR029063 -
Vra7g1649 338 Pfam Spermine/spermidine synthase domain 105 293 - -
Vra7g1649 338 PANTHER SYNTHASE 1, PUTATIVE-RELATED 19 333 - -
Vra7g1649 338 Pfam Spermidine synthase tetramerisation domain 50 102 IPR035246 -
Vra7g1649 338 Gene3D Spermidine synthase, tetramerisation domain 34 101 IPR037163 -
Vra7g1649 338 Hamap Polyamine aminopropyltransferase [speE]. 50 334 IPR001045 GO:0003824
Vra7g1649 338 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 49 285 IPR030374 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1649 Vra-Chr7 35018942 35021715 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1649 K00797 - gmx:100788406 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0491 5 5645895 5649464 Vra7g1649 7 35018942 35021715 ECH
Vra7g1649 7 35018942 35021715 Vra7g1649 7 35018942 35021715 ECH