Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0491 ATGGAAAATCGTCCTTCAGCTATGATCACCAATGGCAAAACTGCTTTCTCAACTCCAACTTCCACACACGAAGGAGACGCTGGAAAACCTGAAATTCGTCTACATCCACAAATTCCAGGATGGTTTTCAGAATATTCTCCACTATGGCCAGGACAAGCTCACTTCTTCAAGGTAGAAAAGATTTATTTCCAAGGGAAATCTAAATACCAGGATATGCTAGTTTTTCAGTCATCAACTTATGGTAAGGTTTTTGTTCTTGATGGAGCACTCCAACTGACAGAGAAGGACGAATGTGCTTACCAAGAAATGATCACTCACCTTCCTCTTTGCTCTATCCCTAACCCAAAAAAGGTGTTGCTTATAGGTGGTGGAGATGGTGGCATCCTAAGGGAAATTTCCCGTCACTCGTCTGTTGAACAAATCGACATATGTGAAATTGACACCATGCTCATTGATGTGTATAAAGAATATTTCCCAGACGTGGCGGTTGGGTACAAAGACCCTCGAGTGAAGCTTCACATCATAGATGGAACTCTCTTTTTGAATTCTGTAGCAAGAGGAACCTATGATGCCATAATAGTGGATGCCTTCGACCCAATAAGGCCTGATCATGAGCTATTTGAATGTGAGTTTTTTGAACTGGTTTCTATGGCTCTTCGACCTGGAGGAGTTCTGTGCATCCAAGCAGAGAGTATTTGGTTTGAGTCATTGGATATTGAAGAACTCTTCACCAAATGTCACCAAACTTTAAAAGGTTCCTCTGATTATGCTTGGACAACTGTTCCTGCATATCCAAGTGGGGTCATTGGTTTCTTGCTGTGCTCCACCGAAGGTCCTTATGTCGACTTCCGAAATCCAATCAACCCCATCGATCCCGAAAATTATGGCATATCAAACCAACCCTTGAAGTTTTACAACTCAGAAGTTCATTCAGCTGCGTTTTGCTTACCATCTTTTGCCAAAAGGTTCTCAAATGCCAAAGCTACTAAAAGGCCGTAG 999 0.4224 MENRPSAMITNGKTAFSTPTSTHEGDAGKPEIRLHPQIPGWFSEYSPLWPGQAHFFKVEKIYFQGKSKYQDMLVFQSSTYGKVFVLDGALQLTEKDECAYQEMITHLPLCSIPNPKKVLLIGGGDGGILREISRHSSVEQIDICEIDTMLIDVYKEYFPDVAVGYKDPRVKLHIIDGTLFLNSVARGTYDAIIVDAFDPIRPDHELFECEFFELVSMALRPGGVLCIQAESIWFESLDIEELFTKCHQTLKGSSDYAWTTVPAYPSGVIGFLLCSTEGPYVDFRNPINPIDPENYGISNQPLKFYNSEVHSAAFCLPSFAKRFSNAKATKRP* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0491 332 Pfam Spermidine synthase tetramerisation domain 40 94 IPR035246 -
Vra5g0491 332 MobiDBLite consensus disorder prediction 1 30 - -
Vra5g0491 332 PANTHER SPERMIDINE/SPERMINE SYNTHASE 39 326 IPR001045 GO:0003824
Vra5g0491 332 PANTHER SPERMIDINE SYNTHASE 39 326 - -
Vra5g0491 332 Hamap Polyamine aminopropyltransferase [speE]. 40 325 IPR001045 GO:0003824
Vra5g0491 332 Gene3D Spermidine synthase, tetramerisation domain 23 93 IPR037163 -
Vra5g0491 332 CDD AdoMet_MTases 139 228 - -
Vra5g0491 332 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 118 131 IPR030373 -
Vra5g0491 332 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 39 322 IPR029063 -
Vra5g0491 332 MobiDBLite consensus disorder prediction 1 24 - -
Vra5g0491 332 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 39 276 IPR030374 -
Vra5g0491 332 Pfam Spermine/spermidine synthase domain 97 283 - -
Vra5g0491 332 Gene3D Vaccinia Virus protein VP39 94 329 IPR029063 -
Vra5g0491 332 TIGRFAM speE: spermidine synthase 41 319 IPR001045 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0491 Vra-Chr5 5645895 5649464 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0491 K00797 - gmx:100785862 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0491 5 5645895 5649464 Vra7g1649 7 35018942 35021715 ECH
Vra5g0491 5 5645895 5649464 Vra5g0491 5 5645895 5649464 ECH