Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1639 ATGAGTAGTTCGTCCAATGATAAGAAGCAAGACAAGGTGGGTGAGACTCAAACAAGAACTTTAAGCTGTGTTGTTTCACAAAAACCAAAGAAAGTATCACAATCACAATTCTTCCCAGAAACCCCATCAAAGTCAAGATCACCAATAGCAAAAAGCCCTACTGCAAAACCTCCTATTGATAGGAAGAATGACAGCCCTTTGAGAAAACAGAACACAGGTGTTCACCGTGTGAGAAAAACTACCGGTGGAAGATCACTGTCACAAGGTCAGATTGATATTTCCTCTGGAGCAGCATTGAATAAGCCTGAACTGGGACAAGCTTTACTAAACCAAGCAAGGGACATAATTTCATCTGGAAATAATCCGACCAGAGCTCTTGAATTAGCCCTTCAAGCAAAGAAATTATTTGAGAGAACTGCTGCTTATGGGAAACCAAATTTGGATATGGCCATGTGTTTGCATGTTACTGCAGTAATACATTGCACTTTGGGCAATTTAAATGAAGCAATTTCGCTAGTAGAGCGCTCAATAGAGATTCCTGTTATTGAGGAAGGCCAACAGCACGCCATTGCTAAATTTGCTGGGCACATGCATCTAGGAGACATTTATGCTATGTCGGGCCAGCTGGAGAAGTCAATTAAGTGCTACACCGAAGGGTTAGAATTGCAAAGGAAGGTTTTGGGAGAAACAGACCCAAGAGTTGGCGAAACGTGTAGGTATGTGGCTGAGGCTAACTTTCAAGCCTTGCAATTTGAGGAGGCGGAGAGGATGTGCCAAATTGCCCTTGATATCCACAGAGCAAATGGTTCACCCTCATCTCTTGAAGAGGCAGCCGATAGGAGGCTGATGGGCCTTATATGTGAAGCAGATGGTAAACACGAAGCAGCCCTGGAGCATCTTGTGTTGGCCAGCATGGCAATGGTAGCAAATGGCCAAGAAGTGGAAGTGGCATTTGTTGACTGCAACATTGGAGACACGTACTTATCATTGGCTAGATATGATGAGGCCATCTTTGCATATCAGAGAGCATTGAAAGTTTTCAAGATCCACAAAGGTGAGAACCATCCTGCTGTGGGGTCAGTTTTTGTACGTCTGGCTGACTTGTATAGCAGAACATGGAAGATTAGAGAGTCAAAATTATACTGTGAGGAGGCACTTAAAATCTATGAGAATCCCATGCCTGGGGTCCCTCCAGAGGAGACTGCTAACGGTTTTATGAATGTATCAGCCATCTACGAGTCGATGAATGAGCTAGAAGAGGCACTTAAATTACTTCACAAGGCACTAACCATACTTAATGATGTCTCTGGTCAGATAAACACCATAGCAGGAATCGAAGCTCAGATGGGGGTCATGTACTTTGTGTTGAAGAACTACACTGAATCTTATAACTGTCTCAAGAATGCCGTGTCCAAGCTTCGTGCTACTGGAGGAAAGAAATCAGCCTTCTTTGGTACTGTTCTTAATCAAATGGGACTTGCTTGTGTGCAACTCCATTCCCTGAATGAAGCTGCAGCATTATTTGAAGAAGCAAGGGCCATTTTGGAACAAGAGAATGGACTCTATCACACTGAGACACTTGGAGTATGTGGCAATCTTGCTGGAACATATGATGCAATTGGAAGGCTGGATGAGGCAATTGAAATTCTTGAAAACATTGTGGTAATGAGGGAAGAAAAGCTTGGGACTGCAAATCCTGATGTTGCTGATGAGAAGAGAAGGTTGGAGGAGTTGTTGAAGGAGACAGGGAAAGTTCGAAACAGAAAAACGAAGTCACTGGAGAACCTTTTTGATCATGATTATATATGA 1809 0.4317 MSSSSNDKKQDKVGETQTRTLSCVVSQKPKKVSQSQFFPETPSKSRSPIAKSPTAKPPIDRKNDSPLRKQNTGVHRVRKTTGGRSLSQGQIDISSGAALNKPELGQALLNQARDIISSGNNPTRALELALQAKKLFERTAAYGKPNLDMAMCLHVTAVIHCTLGNLNEAISLVERSIEIPVIEEGQQHAIAKFAGHMHLGDIYAMSGQLEKSIKCYTEGLELQRKVLGETDPRVGETCRYVAEANFQALQFEEAERMCQIALDIHRANGSPSSLEEAADRRLMGLICEADGKHEAALEHLVLASMAMVANGQEVEVAFVDCNIGDTYLSLARYDEAIFAYQRALKVFKIHKGENHPAVGSVFVRLADLYSRTWKIRESKLYCEEALKIYENPMPGVPPEETANGFMNVSAIYESMNELEEALKLLHKALTILNDVSGQINTIAGIEAQMGVMYFVLKNYTESYNCLKNAVSKLRATGGKKSAFFGTVLNQMGLACVQLHSLNEAAALFEEARAILEQENGLYHTETLGVCGNLAGTYDAIGRLDEAIEILENIVVMREEKLGTANPDVADEKRRLEELLKETGKVRNRKTKSLENLFDHDYI* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1639 602 Coils Coil 568 588 - -
Vra7g1639 602 Coils Coil 415 435 - -
Vra7g1639 602 MobiDBLite consensus disorder prediction 1 89 - -
Vra7g1639 602 Gene3D Tetratricopeptide repeat domain 475 580 IPR011990 GO:0005515
Vra7g1639 602 MobiDBLite consensus disorder prediction 57 71 - -
Vra7g1639 602 ProSiteProfiles TPR repeat profile. 402 435 IPR019734 GO:0005515
Vra7g1639 602 ProSiteProfiles TPR repeat profile. 317 350 IPR019734 GO:0005515
Vra7g1639 602 MobiDBLite consensus disorder prediction 16 50 - -
Vra7g1639 602 SMART tpr_5 317 350 IPR019734 GO:0005515
Vra7g1639 602 SMART tpr_5 527 560 IPR019734 GO:0005515
Vra7g1639 602 SMART tpr_5 235 268 IPR019734 GO:0005515
Vra7g1639 602 SMART tpr_5 485 518 IPR019734 GO:0005515
Vra7g1639 602 SMART tpr_5 443 476 IPR019734 GO:0005515
Vra7g1639 602 SMART tpr_5 193 226 IPR019734 GO:0005515
Vra7g1639 602 SMART tpr_5 359 392 IPR019734 GO:0005515
Vra7g1639 602 SMART tpr_5 402 435 IPR019734 GO:0005515
Vra7g1639 602 PANTHER KINESIN LIGHT CHAIN 6 599 - -
Vra7g1639 602 SUPERFAMILY TPR-like 197 391 IPR011990 GO:0005515
Vra7g1639 602 Pfam Tetratricopeptide repeat 319 391 - -
Vra7g1639 602 Pfam Tetratricopeptide repeat 486 551 - -
Vra7g1639 602 SUPERFAMILY TPR-like 354 556 IPR011990 GO:0005515
Vra7g1639 602 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 6 599 - -
Vra7g1639 602 Gene3D Tetratricopeptide repeat domain 90 304 IPR011990 GO:0005515
Vra7g1639 602 Coils Coil 498 518 - -
Vra7g1639 602 Coils Coil 456 476 - -
Vra7g1639 602 Gene3D Tetratricopeptide repeat domain 305 474 IPR011990 GO:0005515
Vra7g1639 602 SUPERFAMILY TPR-like 123 223 IPR011990 GO:0005515
Vra7g1639 602 Pfam MalT-like TPR region 120 317 IPR041617 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1639 Vra-Chr7 34853611 34855715 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1639 - - vra:106766363 1167.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0501 5 5871522 5875653 Vra7g1639 7 34853611 34855715 ECH
Vra7g1639 7 34853611 34855715 Vra7g1639 7 34853611 34855715 ECH
Vra7g1639 7 34853611 34855715 Vra5g0501 5 5871522 5875653 PCT