Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0501 ATGAGCTTTTATTATATCATGGAAGAGTTGAAGATGACAGGAAATGTAACGAACGGTGTTCATGATGAAGGGGAAGGTAATGAGATGAATGTAAAACGTGATTCCCCTTCTAAGGAAACCTCGAGTCCGGGAAAAGTTGAAGGCGATACTGGTAATTTTGGTGTTGATGGGGAGGTTGAGCCCTCCATTGAACAGCTTTATGAGAATGTGTGTGACATGCAGAGTTCGGATCAGTCACCGTCACGGCAAAGTTTTGGATCTGATGGCGATGAGTCTAGAATCGATTCGGAATTGCGCCATCTAGTTGGAGGACGGATGAGGGAGGTAGAGATAATGGAAGAGGAAGTTGGGGAGGAGAAAGGGCAAGAAAGGAGTTCAAGTAGTGAAATATCTTCCGGATTGGATGGCTTGACCACTGATAAGAAATTGGATCAGGTGAATGAGATTCAGGAGGTTCAGCCTGCAGCTACTAGTTCTGGTTCCTCAGTAAAGTCTGTTGAGGCATCGAGTTCACGGGTGGGACCTGATACGTCGCCCAAATCAACAGCCAAGGGAAAAAGTCCTGCCCCAAAACCAAAACCTCCTATGCAAAGAAAGAATGGTAGACCTTCGAGGAAACAAAGTAGTGGTGTTACTGGCGTGAAGAATTTGAAGAATTCTCCTTCGGGAAATAAGTCAGTATCACAAAAACGTGTTGAGAAAAGGGCCGAGTCCGCATTGGACAGACCTGAGAGGGCACCGATATTACTAAAACAAGCAAGAGATATGATTTCATTCGGGGATAATCCTAATAAGGCTCTTGACTTAGCTCTTCAAGCAATGAAACTGTTTGAGAAGTTAGGTGATGAGAAACCGAGCTTAGAGCTGGTTATGTGTTTACATGTTATTTCAGCAATATATTGCAGCTTGGGTCAATATGGTGAGGCAATCCCAATTCTTGAGCGGTCAATTGAGATTCCTGTTATTGGGGAAAGTCAGGAACATGCCCTTGCTAAATTTGCTGGTCACATGCAACTGGGAGACACCTATGCTATGCTGGGCCAGCTTGAGAATTCAATTAAGTGCTATACCACTGGATTAGAAGTACAGAAGCAGATTTTGGGAGAGACAGACCCAAGAGTTGGTGAAACTTGTCGGTACGTGGCTGAAGCTAATGTTCAGGCTTTGCGATTTGATGAAGCGGAGAGGCTTTGTCAGATGGCTCTAGACATTCATAAAGCAAATAATCCAGCTCCATCTCTTGAAGAGGCAGCTGATAGGAGGCTCATGGGCCTTGTATGTGATACAAAGGGAAATCACGAAGCTGCTCTTGAGCATCTTGTTCTAGCCAGCATGGCAATGGTCGCTAATGGCCAGGAAGGGGATGTGGCTTCTGTTGATTGCAGCATTGGAGATGCATACTTGTCTTTGTCTCGATATGATGAAGCTATCTTTGCGTATCAGAAAGCATTAACAGCTTTCAAGACCAACAAAGGAGAGAATCATCCAACAGTGGGATTTGTCTTTGTGCGTCTGGCTGACTTGTATAACAGGATAGGAAAGATAAGGGAATCAAAATCATATTGTGAGAGTGCACTTAAAATATACGAGAATCCAATTCCTGGAGTTCCTCTAGAGGAGATTGCTAGTGGTCTTACAAATATTTCAACTATCTATGAGTCTATGAATGAACTTGAACGGGCTCTCAAGTTACTGCAGAAAGCACTGGAGATATACAATGATGTCCCTGGTCAGCAAAGCACAATAGCTGGAATTGAAGCTCAGATGGGAGTCATGTACTACATGTTGGGGAACTTTTCTGAATCTTACGAAACTTTGAAGACTGCTACTTCAAAACTTCGTGCTATTGGAGAAAAGAAATCATCTTTCTTTGGTATTGCCCTTAATCAAATGGGACTTGCCTGTGTCCAACGGTATGCCTTAAGTGAGGCAACAGAATTATTTGAAGAAGCAAAGAGTATTTTGGAACAAGAATATGGTCCGTATCACCCAGAAACACTTGGGGTATGCAGTAATCTTGCTGGCACATACGATGCAATTGGCAGAATGGATGATGCAATTCAAATTCTGGAGTACGTTGTAAGCGCGAGGGAGGAAAAGCTTGGGACAGCAAATCCTGACGTGGATGATGAGAAGAAAAGGTTGGGTGAGTTGTTGAAGGAAGCAGGAAGAGTTCGGAGCAGAAAAAACAGATCACTTGAGAACCTTCTTGATGGCAATGCTCACACTGTAAACAATGTTGTCATCAGGGCCTGA 2256 0.4362 MSFYYIMEELKMTGNVTNGVHDEGEGNEMNVKRDSPSKETSSPGKVEGDTGNFGVDGEVEPSIEQLYENVCDMQSSDQSPSRQSFGSDGDESRIDSELRHLVGGRMREVEIMEEEVGEEKGQERSSSSEISSGLDGLTTDKKLDQVNEIQEVQPAATSSGSSVKSVEASSSRVGPDTSPKSTAKGKSPAPKPKPPMQRKNGRPSRKQSSGVTGVKNLKNSPSGNKSVSQKRVEKRAESALDRPERAPILLKQARDMISFGDNPNKALDLALQAMKLFEKLGDEKPSLELVMCLHVISAIYCSLGQYGEAIPILERSIEIPVIGESQEHALAKFAGHMQLGDTYAMLGQLENSIKCYTTGLEVQKQILGETDPRVGETCRYVAEANVQALRFDEAERLCQMALDIHKANNPAPSLEEAADRRLMGLVCDTKGNHEAALEHLVLASMAMVANGQEGDVASVDCSIGDAYLSLSRYDEAIFAYQKALTAFKTNKGENHPTVGFVFVRLADLYNRIGKIRESKSYCESALKIYENPIPGVPLEEIASGLTNISTIYESMNELERALKLLQKALEIYNDVPGQQSTIAGIEAQMGVMYYMLGNFSESYETLKTATSKLRAIGEKKSSFFGIALNQMGLACVQRYALSEATELFEEAKSILEQEYGPYHPETLGVCSNLAGTYDAIGRMDDAIQILEYVVSAREEKLGTANPDVDDEKKRLGELLKEAGRVRSRKNRSLENLLDGNAHTVNNVVIRA* 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0501 751 Pfam Tetratricopeptide repeat 337 364 IPR019734 GO:0005515
Vra5g0501 751 MobiDBLite consensus disorder prediction 201 227 - -
Vra5g0501 751 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 12 740 - -
Vra5g0501 751 Gene3D Tetratricopeptide repeat domain 622 738 IPR011990 GO:0005515
Vra5g0501 751 Gene3D Tetratricopeptide repeat domain 227 442 IPR011990 GO:0005515
Vra5g0501 751 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 12 740 - -
Vra5g0501 751 Coils Coil 548 575 - -
Vra5g0501 751 MobiDBLite consensus disorder prediction 25 40 - -
Vra5g0501 751 MobiDBLite consensus disorder prediction 228 243 - -
Vra5g0501 751 ProSiteProfiles TPR repeat profile. 542 575 IPR019734 GO:0005515
Vra5g0501 751 MobiDBLite consensus disorder prediction 68 87 - -
Vra5g0501 751 SUPERFAMILY TPR-like 256 365 IPR011990 GO:0005515
Vra5g0501 751 MobiDBLite consensus disorder prediction 88 125 - -
Vra5g0501 751 ProSiteProfiles TPR repeat profile. 457 490 IPR019734 GO:0005515
Vra5g0501 751 SMART tpr_5 667 700 IPR019734 GO:0005515
Vra5g0501 751 SMART tpr_5 290 323 IPR019734 GO:0005515
Vra5g0501 751 SMART tpr_5 542 575 IPR019734 GO:0005515
Vra5g0501 751 SMART tpr_5 499 532 IPR019734 GO:0005515
Vra5g0501 751 SMART tpr_5 375 408 IPR019734 GO:0005515
Vra5g0501 751 SMART tpr_5 625 658 IPR019734 GO:0005515
Vra5g0501 751 SMART tpr_5 583 616 IPR019734 GO:0005515
Vra5g0501 751 SMART tpr_5 457 490 IPR019734 GO:0005515
Vra5g0501 751 SMART tpr_5 333 366 IPR019734 GO:0005515
Vra5g0501 751 Pfam Tetratricopeptide repeat 455 531 - -
Vra5g0501 751 Pfam Tetratricopeptide repeat 626 694 - -
Vra5g0501 751 SUPERFAMILY TPR-like 461 695 IPR011990 GO:0005515
Vra5g0501 751 SUPERFAMILY TPR-like 336 439 IPR011990 GO:0005515
Vra5g0501 751 MobiDBLite consensus disorder prediction 16 243 - -
Vra5g0501 751 Pfam Tetratricopeptide repeat 290 319 - -
Vra5g0501 751 Pfam Tetratricopeptide repeat 542 577 - -
Vra5g0501 751 MobiDBLite consensus disorder prediction 150 184 - -
Vra5g0501 751 Gene3D Tetratricopeptide repeat domain 443 620 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0501 Vra-Chr5 5871522 5875653 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0501 - - gmx:100783201 1141.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0501 5 5871522 5875653 Vra7g1639 7 34853611 34855715 ECH
Vra5g0501 5 5871522 5875653 Vra5g0501 5 5871522 5875653 ECH
Vra7g1639 7 34853611 34855715 Vra5g0501 5 5871522 5875653 PCT