Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1630 ATGGAAGTTGTGTGTGGAAGTGGGGTTTGCGTCTCATCTCTTCCGCGCTCATCAACGCTTACCAAAAGCACTGTTCCTCAATTCCGAGTCAGTTATCAACACCTAACACCATTTCCCTCACAATCTCATCTATTCTCCTATCACCCTCCGCCCTATGCTAAAACCCTCCGCGCCAGAACCACCACCAAACCTGCTATTTTCCTTCCCCACTTAGTTGCATCTCTGCAAGTTGACCAGACTTACATAATGGTGAAGCCCGACGGCGTGCAACGTGGTCTTGTGGGAGAAATTATTTCTAGGTTTGAGAAGAAGGGGTTTAAGTTGACTGGCTTGAAGCTCTTCCAGTGCTCTAAAGAGTTAGCTGAGGAGCATTACAAGGACCTAAAACAAAAGTCATTCTTCCCCAAGCTCATTGACTATATTACTTCAGGTCCTGTTGTTTGTATGGCTTGGGAGGGTGTTGGAGTAGTGGCATCCGCACGTAAGCTTATAGGGGCTACTGATCCTCTTCAAGCTGAACCAGGCACAATAAGAGGAGACCTTGCTGTTCAAACAGGAAGGAATGTAGTTCATGGCAGTGACAGTCCTGAAAATGGCAAGCGAGAAGTAGCTCTATGGTTCAAGGAAGGCGAATTATGCGATTGGACCCCCGTTCAAGCACCATGGCTGAGAGAATAA 678 0.472 MEVVCGSGVCVSSLPRSSTLTKSTVPQFRVSYQHLTPFPSQSHLFSYHPPPYAKTLRARTTTKPAIFLPHLVASLQVDQTYIMVKPDGVQRGLVGEIISRFEKKGFKLTGLKLFQCSKELAEEHYKDLKQKSFFPKLIDYITSGPVVCMAWEGVGVVASARKLIGATDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREVALWFKEGELCDWTPVQAPWLRE* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1630 225 ProSitePatterns Nucleoside diphosphate kinases active site. 188 196 IPR023005 -
Vra7g1630 225 CDD NDPk_I 79 207 - -
Vra7g1630 225 SUPERFAMILY Nucleoside diphosphate kinase, NDK 77 223 IPR036850 -
Vra7g1630 225 PRINTS Nucleoside diphosphate kinase signature 80 102 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Vra7g1630 225 PRINTS Nucleoside diphosphate kinase signature 124 143 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Vra7g1630 225 PRINTS Nucleoside diphosphate kinase signature 144 161 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Vra7g1630 225 PRINTS Nucleoside diphosphate kinase signature 165 181 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Vra7g1630 225 PRINTS Nucleoside diphosphate kinase signature 188 207 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Vra7g1630 225 Pfam Nucleoside diphosphate kinase 79 211 IPR034907 -
Vra7g1630 225 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 27 224 - -
Vra7g1630 225 Gene3D - 73 225 IPR036850 -
Vra7g1630 225 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE II, CHLOROPLASTIC 27 224 - -
Vra7g1630 225 Hamap Nucleoside diphosphate kinase [ndk]. 77 212 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Vra7g1630 225 SMART ndk_5 77 214 IPR034907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1630 Vra-Chr7 34753186 34757171 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1630 K00940 - gmx:100500478 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1630 7 34753186 34757171 Vra7g1630 7 34753186 34757171 ECH
Vra7g1630 7 34753186 34757171 Vra11g1163 11 11699072 11703580 PCT