Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1571 ATGATGGATTATCAGTATCTTCTAGGAGGGATCGTGGCTTGTAGTTTCGCATTTTTCTATTTTGTGTATAGTTTTGGAGCAAGAAAGGTCACAAATTCAAGTTCGATTCATGTAGAAAGTAATGAGTGCGAGAAGAAATCATCAGAAAATGGAAGATTTTCACACCAGGCTGCAGAAAGTGCAGACATAATCATTGTGGGTGCAGGCGTTGCCGGTGCTGCTCTTGCTTACACGCTTGGAAAGGATGGTCGCCGAGTACATGTGATTGAAAGGGATTTGAGTGAGCCTGACAGGATCGTGGGGGAATTGCTACAACCTGGGGGATATCTGAAGTTAATTGAGCTGGGTCTTCAGGATTGTGTAAGTGAAATTGATGCTCAGCAAGTCTTTGGGTATGCTCTGTATAAGGATGGCAAAAATACCAAGCTCTCTTATCCCTTGGAAAAGTTTAGCTCTGATGTTTCTGGGAGAAGCTTTCATAATGGCCGTTTCATACAGAGAATGCGAGAAAAGGCCTCATCTCTGCCTAATGTAAATTTAGAACAAGGAACTGTGACATCTCTAATTGAAGAAAAAGGAACCATCATCGGGGTGCAGTACAAAACCAAAAGTGGACAAGAGTTCACAGCCAAGGCTCCCCTCACAATAGTATGTGATGGATGTTTTTCCAACCTTAGGCGTTCTCTTTGCAATCCTAAGGTTGACGTACCCTCTCATTTTGTTGGTCTGGTCTTGGAGAATTGCAATCTTCCATATGCAAATCATGGACACGTGATCTTAGGTGATCCTTCACCCATTTTGTTTTATCCCATCAGTAGCACTGAGATTCGCTGTTTGGTTGATGTGCCTGGCCAAAAGTTACCTTCCCTTGGCAATGGTGAAATGGCCAGTTATTTAAAAACTGTGGTAGCTCCTCAGGTTCCTCCAGAGCTGTATACTTCATTTATAGCAGCAGTCGACAAAGGAAGCATAAGAACCATGCCAAATAGAAGCATGCCTGCCTCACCTCATCCCACACCTGGTGCCCTTCTTATGGGAGATGCCTTCAATATGCGTCACCCTTTAACAGGAGGAGGAATGACAGTAGCTTTATCTGACATTGCTGTGCTAAGGGATCTGCTTAAACCCCTTAGGAATCTGCATGATGCTTCTGCTCTTTGCAGATACCTTGAGTCATTCTACACCCTACGCAAGCCAGTGGCATCCACAATAAACACACTAGCTGGAGCGTTGTACAAAGTGTTTTGTGCTTCTCCTGATCCAGCTAGAAAGGAAATGCGCCAAGCATGTTTTGATTACTTGAGCCTTGGTGGTGTTTTCTCTAATGGACCAATATCTCTGCTCTCTGGTCTAAATCCTCGTCCATTGAGTTTGGTTCTGCATTTCTTTGCGGTTGCTATATATGGTGTTGGACGCTTGCTCATACCATTTCCTTCTCCCAAACGGTTGTGGATTGGAGCTAGATTGATTTCAGGTGCATCAGGGATAATATTCCCCATTATCAAGGCTGAAGGAGTGAGACAAATGTTCTTCCCAGCAACTGTGCCTGCATATTACAGAGTCCCTCCTATTAGTTGA 1578 0.4398 MMDYQYLLGGIVACSFAFFYFVYSFGARKVTNSSSIHVESNECEKKSSENGRFSHQAAESADIIIVGAGVAGAALAYTLGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLQDCVSEIDAQQVFGYALYKDGKNTKLSYPLEKFSSDVSGRSFHNGRFIQRMREKASSLPNVNLEQGTVTSLIEEKGTIIGVQYKTKSGQEFTAKAPLTIVCDGCFSNLRRSLCNPKVDVPSHFVGLVLENCNLPYANHGHVILGDPSPILFYPISSTEIRCLVDVPGQKLPSLGNGEMASYLKTVVAPQVPPELYTSFIAAVDKGSIRTMPNRSMPASPHPTPGALLMGDAFNMRHPLTGGGMTVALSDIAVLRDLLKPLRNLHDASALCRYLESFYTLRKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGVFSNGPISLLSGLNPRPLSLVLHFFAVAIYGVGRLLIPFPSPKRLWIGARLISGASGIIFPIIKAEGVRQMFFPATVPAYYRVPPIS* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1571 525 Pfam Squalene epoxidase 211 484 IPR013698 GO:0004506|GO:0016021|GO:0050660
Vra7g1571 525 PANTHER SQUALENE MONOOXYGENASE 2 524 IPR040125 GO:0004506|GO:0016126
Vra7g1571 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 62 84 - -
Vra7g1571 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 211 226 - -
Vra7g1571 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 339 354 - -
Vra7g1571 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 354 370 - -
Vra7g1571 525 SUPERFAMILY FAD/NAD(P)-binding domain 61 436 IPR036188 -
Vra7g1571 525 PANTHER SQUALENE MONOOXYGENASE-RELATED 2 524 - -
Vra7g1571 525 Pfam NAD(P)-binding Rossmann-like domain 65 91 - -
Vra7g1571 525 Gene3D - 54 441 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1571 Vra-Chr7 33988094 33990978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1571 47 523 Miscellaneous Gene Families AT1G58440 79.455 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1571 K00511 - gmx:100800329 953.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1571 7 33988094 33990978 Vra7g1571 7 33988094 33990978 ECH
Vra7g1571 7 33988094 33990978 Vra10g1432 10 19394585 19397999 PCT