Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1432 ATGGGGATGGATTTTGAATTTATTTTGGGCGGAATTACAGTTTCTACTATGGTTCTTCTGTTTGTTCTATTCAATTCTGCATCAAAGAAGGAGGCCACAGGTTTAGTACATGCAGAAAATAATGGTAGCAGTATGATAACAACAACAGCAGAAAATGGAAACCAACATCAAGAAATTTCACCAACCTCCGACATCATCATTGTCGGTGCTGGGGTTGCTGGTTCAGCCCTTGCTTACACACTTGGCAAGGAAGGAAGGCGAGTGCATGTTATTGAAAGGGACTTGAGTGAACCAGACAGGATTGTGGGAGAATTGCTACAACCTGGAGGTTATCTCAAGCTAATTGAGTTGGATCTCCAAGATTGTGTGGGTGAGATTGATGCTCAGCAAGTCTTTGGCTATGCTCTTTACAAGGATGGGAAAAATACCAAACTTTCTTATTCCTTGGAAAAGTTTGACTCTGATGTTTCTGGAAAAAGCTTTCACAATGGCCGTTTCATACAGAGAATGCGAGAAAAGGCTTCAACTCTTCCAAATGTAAAATTAGAACAAGGGACTGTCACATCTCTGCTAGAAGAAAATGGAATCATCAGAGGGGTAAACTACAAAACCAGAAATGGACAAGAGCTCACAGCTAAGGCTCCACTGACTATAGTATGTGATGGTTGTTTTTCCAACTTGAGACGTTCTCTTTGCAACCCAAAGGTTGATGTACCATCTCATTTTGTTGGTCTGGTCCTAGAGAACTGCAATCTTCCATATGAAAACCACGGGCACGTTATCTTGGGTGATCCTTCTCCCATTTTGTTTTATCCCATAAGTAGCACTGAGATTCGGTGTCTGGTTGATGTGCCTGCTGGCAAAAAATTACCTTCCCTTGGTAATGGGGACATGGCTCGTTATTTGAAAACAGTTGTAGCTCCACAGGTTCCCCCAGAGTTGCATGCTTCTTTTATAGCAGCAGTTGACAAAGGAAACATAAGAAGCATGCCAAACAGAAGCATGCCTGCATCTCCGTATTCCACACCTGGTGCCCTTCTCATGGGAGATGCTTTCAACATGCGTCACCCTTTAACTGGAGGGGGAATGACTGTGGCTTTGTCTGACATTGTTTTGCTGAGGAACCTTCTTAGACCCCTGCATGATCTTCATGATGCTAATGCTCTTTGCAAATATCTTGAATCATTCTACACCCTACGCAAGCCAATGGCATCTACAATAAACACTTTAGCTGGGGCATTATACAAGGTGTTTTGTGCATCACCTGACCCAGCTAGTAAGGAACTGCGCCAGGCTTGTTTCGATTATTTAAGCCTTGGAGGTGTTTTCTCAGATGGACCAATATCTCTACTCTCAGGTCTAAATCCTCGTCCATTAAGCTTGGTTCTTCATTTCTTTGCTGTGGCTATATACGGTGTTGGTCGCTTACTCATACCATTTCCTTCTCCAAAACGCATGTGGATTGGAGCTAGAATTATTTCCGGTGCCTCTGCTATCATTTTTCCCATTATCAGGGCTGAAGGAATTAGACAAATGTTCTTCCCTGCGACTGTGCCAGCATATTACAGAACACCTCCTTCCAATTTGCATGATTAA 1596 0.4292 MGMDFEFILGGITVSTMVLLFVLFNSASKKEATGLVHAENNGSSMITTTAENGNQHQEISPTSDIIIVGAGVAGSALAYTLGKEGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELDLQDCVGEIDAQQVFGYALYKDGKNTKLSYSLEKFDSDVSGKSFHNGRFIQRMREKASTLPNVKLEQGTVTSLLEENGIIRGVNYKTRNGQELTAKAPLTIVCDGCFSNLRRSLCNPKVDVPSHFVGLVLENCNLPYENHGHVILGDPSPILFYPISSTEIRCLVDVPAGKKLPSLGNGDMARYLKTVVAPQVPPELHASFIAAVDKGNIRSMPNRSMPASPYSTPGALLMGDAFNMRHPLTGGGMTVALSDIVLLRNLLRPLHDLHDANALCKYLESFYTLRKPMASTINTLAGALYKVFCASPDPASKELRQACFDYLSLGGVFSDGPISLLSGLNPRPLSLVLHFFAVAIYGVGRLLIPFPSPKRMWIGARIISGASAIIFPIIRAEGIRQMFFPATVPAYYRTPPSNLHD* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1432 531 Pfam Squalene epoxidase 213 487 IPR013698 GO:0004506|GO:0016021|GO:0050660
Vra10g1432 531 Gene3D - 56 444 IPR036188 -
Vra10g1432 531 SUPERFAMILY FAD/NAD(P)-binding domain 64 439 IPR036188 -
Vra10g1432 531 PANTHER SQUALENE MONOOXYGENASE-RELATED 3 531 - -
Vra10g1432 531 Pfam NAD(P)-binding Rossmann-like domain 67 93 - -
Vra10g1432 531 PANTHER SQUALENE MONOOXYGENASE 3 531 IPR040125 GO:0004506|GO:0016126
Vra10g1432 531 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 64 86 - -
Vra10g1432 531 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 213 228 - -
Vra10g1432 531 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 342 357 - -
Vra10g1432 531 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 357 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1432 Vra-Chr10 19394585 19397999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1432 29 527 Miscellaneous Gene Families AT1G58440 74.950 0.0 780
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1432 K00511 - gmx:100795027 937.562
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1571 7 33988094 33990978 Vra10g1432 10 19394585 19397999 PCT