Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1322 ATGAATGATTACAAAGGAAGAGAAGGAGAAATTGTTGTTGTTCGGAAGCGAATCAAAGATAAGACGCAGCATCATCAACAACAACAACATAATCACCGACAACCCAGTCCTTCCACTGCAAGGCCACCCCAGTTTCACCGTCGCTCCGTCTCCCTCCCTAACAATCAACACGAGGAATCTGAAACAGATAACGAAGGATCTGAAGTTAGTGTTTCAGAAGGGGATGACTCATGCTGGATCTCATGGTTTTGCAATTTGAAAGGAAACGAGTTCTTGTGTGAAGTCGATGATGATTTTGTGCAAGACGATTTCAACCTCTGTGGATTAAGCAGTCAAGTGCCTTACTATGATTATGCATTGGATTTAATTTTGGATGTTGAGCCTTCCCACGGAGAAATGTTCACAGAGGAACAGAATGAGTTAATTGAATCTGCAGCGGAGATGCTTTATGGTCTGATTCATGCCAGGTACATTTTGACAAGCAAAGGAATGGCTGCAATGCTTCACAAGTTCAAAAACTTGGACTTTGGCAGATGTCCAAGAGTTTACTGCTCTGGACAACCCTGCCTTCCAGTTGGGCAGTCAGATATTCCTAGGTCAAGTAATGTAAAAATATTTTGCCCTAAGTGCGAAGACACTTATTACCCAAAGTCCAAGTATCAAGACATGGATGGAGCTTATTTTGGAGCTACATTTCCCCACCTCTTTCTGATGACTTACGGGAATCTGAAGCCACAAAAGCCATCACAGAACTATGTACCAAGAGTTTTTGGTTTCAAAGTTCACAAGTCCTGA 795 0.4239 MNDYKGREGEIVVVRKRIKDKTQHHQQQQHNHRQPSPSTARPPQFHRRSVSLPNNQHEESETDNEGSEVSVSEGDDSCWISWFCNLKGNEFLCEVDDDFVQDDFNLCGLSSQVPYYDYALDLILDVEPSHGEMFTEEQNELIESAAEMLYGLIHARYILTSKGMAAMLHKFKNLDFGRCPRVYCSGQPCLPVGQSDIPRSSNVKIFCPKCEDTYYPKSKYQDMDGAYFGATFPHLFLMTYGNLKPQKPSQNYVPRVFGFKVHKS* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1322 264 PRINTS Casein kinase II regulatory subunit family signature 78 94 IPR000704 GO:0005956|GO:0019887
Vra7g1322 264 PRINTS Casein kinase II regulatory subunit family signature 95 109 IPR000704 GO:0005956|GO:0019887
Vra7g1322 264 PRINTS Casein kinase II regulatory subunit family signature 150 171 IPR000704 GO:0005956|GO:0019887
Vra7g1322 264 PRINTS Casein kinase II regulatory subunit family signature 175 196 IPR000704 GO:0005956|GO:0019887
Vra7g1322 264 PRINTS Casein kinase II regulatory subunit family signature 197 218 IPR000704 GO:0005956|GO:0019887
Vra7g1322 264 PRINTS Casein kinase II regulatory subunit family signature 224 241 IPR000704 GO:0005956|GO:0019887
Vra7g1322 264 Pfam Casein kinase II regulatory subunit 79 260 IPR000704 GO:0005956|GO:0019887
Vra7g1322 264 PANTHER CASEIN KINASE II SUBUNIT BETA 7 263 IPR000704 GO:0005956|GO:0019887
Vra7g1322 264 MobiDBLite consensus disorder prediction 1 70 - -
Vra7g1322 264 MobiDBLite consensus disorder prediction 1 17 - -
Vra7g1322 264 ProSitePatterns Casein kinase II regulatory subunit signature. 179 210 IPR000704 GO:0005956|GO:0019887
Vra7g1322 264 Gene3D - 176 249 - -
Vra7g1322 264 MobiDBLite consensus disorder prediction 29 51 - -
Vra7g1322 264 PANTHER CASEIN KINASE II SUBUNIT BETA-2 7 263 - -
Vra7g1322 264 SUPERFAMILY Casein kinase II beta subunit 78 263 IPR035991 GO:0005956|GO:0019887
Vra7g1322 264 SMART CK_II_beta_2 78 260 IPR000704 GO:0005956|GO:0019887
Vra7g1322 264 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 71 175 IPR016149 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1322 Vra-Chr7 30111465 30114413 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1322 K03115 - gmx:100789357 441.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1322 7 30111465 30114413 Vra7g1322 7 30111465 30114413 ECH
Vra7g1322 7 30111465 30114413 Vra11g0429 11 3109498 3112764 PCT